Evidence map›Paper›PMID 23444193›Full record

ArticleAnnals of the rheumatic diseases2013

New insight on the Xq28 association with systemic sclerosis.

F David Carmona, M Carmen Cénit, Lina-Marcela Diaz-Gallo, Jasper C A Broen, Carmen P Simeón, Patricia E Carreira, José-Luis Callejas-Rubio, Vicente Fonollosa, Francisco J López-Longo, Miguel A González-Gay and 22 more

Open access · greenAbstract readMulticenter Study
In one paragraph

Article in Annals of the rheumatic diseases, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 68 citations in OpenAlex.

  1. Trial
  2. Article
  3. Review
  4. Review
  5. Article
  6. Current Concepts on the Pathogenesis of Systemic Sclerosis.Clinical reviews in allergy & immunology · 2023
    Review
  7. The Immunogenetics of Systemic Sclerosis.Advances in experimental medicine and biology · 2022
    Article
  8. Updates on genetics in systemic sclerosis.Inflammation and regeneration · 2021
    Review
  9. Pathogenesis of systemic sclerosis associated interstitial lung disease.Journal of scleroderma and related disorders · 2020
    Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Journal of immunology research · 2017
    Article
  16. Article
  17. Genetics of systemic sclerosis: recent advances.Current opinion in rheumatology · 2015
    Review
  18. Genetics, Epigenetics, and Genomics of Systemic Sclerosis.Rheumatic diseases clinics of North America · 2015
    Review
  19. Pathogenesis of Systemic Sclerosis.Frontiers in immunology · 2015
    Review
  20. Genetic Susceptibility to Interstitial Lung Disease Associated with Systemic Sclerosis.Clinical medicine insights. Circulatory, respiratory and pulmonary medicine · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors at 20 institutions in 5 countries.

F David CarmonaInstituto de Parasitología y Biomedicina 'López-Neyra', CSIC, , Granada, Spain.
M Carmen Cénit
Lina-Marcela Diaz-Gallo
Jasper C A Broen
Carmen P Simeón
Patricia E Carreira
José-Luis Callejas-Rubio
Vicente Fonollosa
Francisco J López-Longo
Miguel A González-Gay
Nicolas Hunzelmann
Gabriela Riemekasten
Torsten Witte
Alexander Kreuter
Jörg H W Distler
Rajan Madhok
Paul Shiels
Jacob M van Laar
Annemie J Schuerwegh
Madelon C Vonk
Alexandre E Voskuyl
Carmen Fonseca
Christopher P Denton
Ariane Herrick
Jane Worthington
Frank C Arnett
Filemon K Tan
Shervin Assassi
Timothy R D J Radstake
Maureen D Mayes
Javier Martín
Spanish Scleroderma Group
Instituto de Parasitología y Biomedicina "López - Neyra" · ESThe University of Texas Health Science Center at Houston · USGlasgow Royal Infirmary · GBHospital Virgen del Valle · ESUniversity Medical Center Utrecht · NLUniversity of Manchester · GBAmsterdam UMC Location VUmc · NLCharité - Universitätsmedizin Berlin · DEFriedrich-Alexander-Universität Erlangen-Nürnberg · DEFundación Marques de Valdecilla · ESHospital General Universitario Gregorio Marañón · ESInstituto de Investigación Biosanitaria de Granada · ESLeiden University Medical Center · NLMedizinische Hochschule Hannover · DENewcastle University · GBRadboud University Nijmegen · NLResearch Institute Hospital 12 de Octubre · ESRuhr University Bochum · DEThe Royal Free Hospital · GBUniversity College London · GB

Funding

Role of TGF-beta and CTGF Signaling Transgenic Mouse Models of SclerodermaP50AR054144 · NIAMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI ARNETT, FRANK C · 2006 to 2010
$7.7M
CTSA: K12 COMPONENTKL2RR024149 · NCRR · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MCPHERSON, DAVID D · 2006 to 2011
$6.7M
Two-Stage Genome-Wide Association Study in Systemic SclerosisR01AR055258 · NIAMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MAYES, MAUREEN MAUREEN · 2008 to 2012
$5.9M
Studies of HLA Region Genomics in Systemic Sclerosis and Ankylosing SpondyilitisU01AI090909 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MAYES, MAUREEN MAUREEN, REVEILLE, JOHN DUFFIN · 2010 to 2014
$2.9M
SCLERODERMA FAMILY REGISTRY AND DNA REPOSITORY-264002251-264002251-264002251N01AR002251 · NIAMS · WAYNE STATE UNIVERSITY · PI MAYES, MAUREEN · 2000 to 2006
$659k
Molecular Markers for Progression of Pulmonary Fibrosis in Systemic SclerosisK23AR061436 · NIAMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI ASSASSI, SHERVIN · 2011 to 2014
$494k
Arthritis Research UK 17552NCRR NIH HHS KL2 RR024149NIAID NIH HHS U01 AI090909NIAMS NIH HHS K23 AR061436NIAMS NIH HHS N01 AR002251NIAMS NIH HHS P50 AR054144NIAMS NIH HHS R01 AR055258
6 · The paper itself

Abstract

objectiveTo evaluate whether the systemic sclerosis (SSc)-associated IRAK1 non-synonymous single-nucleotide polymorphism rs1059702 is responsible for the Xq28 association with SSc or whether there are other independent signals in the nearby methyl-CpG-binding protein 2 gene (MECP2).

methodsWe analysed a total of 3065 women with SSc and 2630 unaffected controls from five independent Caucasian cohorts. Four tag single-nucleotide polymorphisms of MECP2 (rs3027935, rs17435, rs5987201 and rs5945175) and the IRAK1 variant rs1059702 were genotyped using TaqMan predesigned assays. A meta-analysis including all cohorts was performed to test the overall effect of these Xq28 polymorphisms on SSc.

resultsIRAK1 rs1059702 and MECP2 rs17435 were associated specifically with diffuse cutaneous SSc (PFDR=4.12×10(-3), OR=1.27, 95% CI 1.09 to 1.47, and PFDR=5.26×10(-4), OR=1.30, 95% CI 1.14 to 1.48, respectively), but conditional logistic regression analysis showed that the association of IRAK1 rs1059702 with this subtype was explained by that of MECP2 rs17435. On the other hand, IRAK1 rs1059702 was consistently associated with presence of pulmonary fibrosis (PF), because statistical significance was observed when comparing SSc patients PF+ versus controls (PFDR=0.039, OR=1.30, 95% CI 1.07 to 1.58) and SSc patients PF+ versus SSc patients PF- (p=0.025, OR=1.26, 95% CI 1.03 to 1.55).

conclusionsOur data clearly suggest the existence of two independent signals within the Xq28 region, one located in IRAK1 related to PF and another in MECP2 related to diffuse cutaneous SSc, indicating that both genes may have an impact on the clinical outcome of the disease.

Indexed as

Case-Control StudiesChromosomes, Human, XFemaleGene FrequencyGenetic Diseases, X-LinkedGenetic Predisposition to DiseaseHaplotypesHumansInterleukin-1 Receptor-Associated KinasesLinkage DisequilibriumMethyl-CpG-Binding Protein 2Polymorphism, Single NucleotidePulmonary FibrosisScleroderma, DiffuseScleroderma, SystemicInterleukin-1 Receptor-Associated KinasesIRAK1 protein, humanMECP2 protein, humanMethyl-CpG-Binding Protein 2Autoimmune DiseasesGene PolymorphismSystemic Sclerosis

Identifiers

PMID23444193
PMCPMC3818491
OpenAlexW2160371448

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.