Evidence map›Paper›PMID 23444167›Full record

ArticleAmerican journal of medical genetics. Part A2013

Fragile X AGG analysis provides new risk predictions for 45-69 repeat alleles.

Sarah L Nolin, Sachin Sah, Anne Glicksman, Stephanie L Sherman, Emily Allen, Elizabeth Berry-Kravis, Flora Tassone, Carolyn Yrigollen, Amy Cronister, Marcia Jodah and 6 more

Open access · greenAbstract read
In one paragraph

Article in American journal of medical genetics. Part A, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed, 1 pooled it
11.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 1 synthesis or guideline pooled it, 125 citations in OpenAlex.

  1. Does theFMR1 gene affect IVF success?Reproductive biomedicine online · 2019
    Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
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  8. Review
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  10. Population-based FMR1 carrier screening among reproductive women.Journal of assisted reproduction and genetics · 2024
    Article
  11. Prevalence of theGenes · 2024
    Article
  12. Review
  13. Review
  14. Article
  15. Article
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15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 1 country.

Sarah L NolinNew York State Institute for Basic Research in Developmental Disabilities, Staten Island, NY 10314, USA. sallynolin@gmail.com
Sachin Sah
Anne Glicksman
Stephanie L Sherman
Emily Allen
Elizabeth Berry-Kravis
Flora Tassone
Carolyn Yrigollen
Amy Cronister
Marcia Jodah
Nicole Ersalesi
Carl Dobkin
W Ted Brown
Raghav Shroff
Gary J Latham
Andrew G Hadd
New York State Office for People With Developmental Disabilities · USAsuragen (United States) · USEmory University · USSequenom (United States) · USUniversity of California, Davis · USRush University Medical Center · US

Funding

Restoring FMRP Phenotypes Frpm Temporal Regional and Splice- Isoforms VarationsP30HD002274 · NICHD · UNIVERSITY OF WASHINGTON · PI GURALNICK, MICHAEL J · 1985 to 2013
$33.6M
UNDERSTANDING FXTAS AMONG MALES WITH THE FMR1 PREMUTATIONP30HD024064 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI TOLIAS, KIMBERLY R · 1988 to 2013
$29.4M
Genetics Epidemiology of the FMR1 GeneR01HD029909 · NICHD · EMORY UNIVERSITY · PI SHERMAN, STEPHANIE L. · 1994 to 2009
$6.1M
Technologies for Mapping Interspersed AGG Sequences in the FMR1 GeneR44HD066953 · NICHD · ASURAGEN, INC. · PI CHEN, LIANGJING CHEN · 2011 to 2012
$1.3M
NICHD NIH HHS 2R44HD0669353-02NICHD NIH HHS HD02274NICHD NIH HHS P30 HD002274NICHD NIH HHS P30 HD024064NICHD NIH HHS P30 HD24064NICHD NIH HHS R01 HD029909NICHD NIH HHS R01 HD29909NICHD NIH HHS R44 HD066953
6 · The paper itself

Abstract

We investigated the effect of AGG interruptions on fragile X repeat instability upon transmission of fragile X intermediate and small premutation alleles with 45-69 CGG repeats. The FMR1 repeat structure was determined for 375 mothers, 48 fathers, and 538 offspring (457 maternal and 81 paternal transmissions) using a novel PCR assay to determine repeat length and AGG interruptions. The number of AGG interruptions and the length of uninterrupted CGG repeats at the 3' end were correlated with repeat instability on transmission. Maternal alleles with no AGGs conferred the greatest risk for unstable transmissions. All nine full mutation expansions were inherited from maternal alleles with no AGGs. Furthermore, the magnitude of repeat expansion was larger for alleles lacking AGG interruptions. Transmissions from paternal alleles with no AGGs also exhibited greater instability than those with one or more AGGs. Our results demonstrate that characterization of the AGG structure within the FMR1 repeat allows more accurate risk estimates of repeat instability and expansion to full mutations for intermediate and small premutation alleles.

Indexed as

AllelesTrinucleotide Repeat ExpansionFemaleFragile X Messenger Ribonucleoprotein 1Fragile X SyndromeGenomic InstabilityHumansInheritance PatternsMaleMutationPrognosisRiskFMR1 protein, humanFragile X Messenger Ribonucleoprotein 1

Identifiers

PMID23444167
PMCPMC4396070
OpenAlexW1996128764

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.