Evidence map›Paper›PMID 23443047›Full record

ArticleThe EMBO journal2013

ParA-mediated plasmid partition driven by protein pattern self-organization.

Ling Chin Hwang, Anthony G Vecchiarelli, Yong-Woon Han, Michiyo Mizuuchi, Yoshie Harada, Barbara E Funnell, Kiyoshi Mizuuchi

Open access · greenAbstract read
In one paragraph

Article in The EMBO journal, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed
11.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed, 178 citations in OpenAlex.

  1. Article
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  5. Review
  6. Article
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  8. Article
  9. Article
  10. Plasmid partitioning driven by collective migration of ParA between nucleoid lobes.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Review
  12. TipN's involvement with centromere segregation in Caulobacter crescentus.bioRxiv : the preprint server for biology · 2023
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Chromosome remodelling by SMC/Condensin inProceedings of the National Academy of Sciences of the United States of America · 2022
    Article

39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Ling Chin HwangLaboratory of Molecular Biology, National Institute of Diabetes, and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892-0540, USA.
Anthony G Vecchiarelli
Yong-Woon Han
Michiyo Mizuuchi
Yoshie Harada
Barbara E Funnell
Kiyoshi Mizuuchi
National Institute of Diabetes and Digestive and Kidney Diseases · USKyoto University · JPNational Institutes of Health · USUniversity of Toronto · CA

Funding

Study of the mechanism of bacterial chromosome partitioning systemsZIADK036165 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI MIZUUCHI, KIYOSHI · 2009 to 2025
$11.1M
CIHR 37997Intramural NIH HHS Z99 DK999999
6 · The paper itself

Abstract

DNA segregation ensures the stable inheritance of genetic material prior to cell division. Many bacterial chromosomes and low-copy plasmids, such as the plasmids P1 and F, employ a three-component system to partition replicated genomes: a partition site on the DNA target, typically called parS, a partition site binding protein, typically called ParB, and a Walker-type ATPase, typically called ParA, which also binds non-specific DNA. In vivo, the ParA family of ATPases forms dynamic patterns over the nucleoid, but how ATP-driven patterning is involved in partition is unknown. We reconstituted and visualized ParA-mediated plasmid partition inside a DNA-carpeted flowcell, which acts as an artificial nucleoid. ParA and ParB transiently bridged plasmid to the DNA carpet. ParB-stimulated ATP hydrolysis by ParA resulted in ParA disassembly from the bridging complex and from the surrounding DNA carpet, which led to plasmid detachment. Our results support a diffusion-ratchet model, where ParB on the plasmid chases and redistributes the ParA gradient on the nucleoid, which in turn mobilizes the plasmid.

Indexed as

Models, BiologicalAdenosine TriphosphatasesAdenosine TriphosphateBacteriophage P1Cell DivisionDNA, BacterialF FactorHydrolysisKineticsProtein BindingProtein MultimerizationTime-Lapse ImagingViral ProteinsAdenosine TriphosphatasesAdenosine TriphosphateDNA, BacterialParB protein, Enterobacteria phage P1Viral Proteins

Identifiers

PMID23443047
PMCPMC3642677
OpenAlexW1988717852

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.