Evidence map›Paper›PMID 23442966›Full record

ArticleBiophysical journal2013

Wide-angle X-ray solution scattering for protein-ligand binding: multivariate curve resolution with Bayesian confidence intervals.

David D L Minh, Lee Makowski

Abstract read
In one paragraph

Article in Biophysical journal, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. IUCrJ · 2021
    Article
  6. Article
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  8. Article
  9. Article
  10. Article
  11. Review
  12. Singular value decomposition as a tool for background corrections in time-resolved XFEL scattering data.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2014
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

David D L MinhBiosciences Division, Argonne National Laboratory, Argonne, IL, USA.
Lee Makowski

Funding

X-RAY STUDIES OF NEUROFIBRILLARY TANGLES IN ALZHEIMER'S DISEASE BRAIN TISSUEP41RR008630 · NCRR · ILLINOIS INSTITUTE OF TECHNOLOGY · PI IRVING, THOMAS C · 2001 to 2011
$14.4M
MADMAX: Precise Measurement of Conformational Changes in ProteinsR01GM085648 · NIGMS · UNIVERSITY OF CHICAGO · PI MAKOWSKI, LEE · 2008 to 2011
$1.2M
NCRR NIH HHS P41 RR008630NCRR NIH HHS RR-08630NIGMS NIH HHS R01 GM085648NIGMS NIH HHS R01GM-085648
6 · The paper itself

Abstract

A new way to use wide-angle x-ray solution scattering to study protein-ligand binding is presented. First, scattering patterns are measured at different protein and ligand concentrations. Multivariate curve resolution based on singular value decomposition and global analysis is applied to estimate the binding affinities and reference patterns (i.e., the scattering patterns of individual components). As validated by simulation, Bayesian confidence intervals provide accurate uncertainty estimates for the binding free energies and reference patterns. Experimental results from several protein-ligand systems demonstrate the feasibility of the approach, which promises to expand the role of wide-angle x-ray scattering as a quantitative biophysical tool.

Indexed as

X-Ray DiffractionAcetylglucosamineAlcohol DehydrogenaseAnimalsBayes TheoremChickensGalectinsHumansLactoseLigandsMolecular Docking SimulationMultivariate AnalysisMuramidaseNiacinamideProtein BindingProteinsAcetylglucosamineAlcohol DehydrogenaseGalectinsLactoseLigandsMuramidaseNiacinamideProteins

Identifiers

PMID23442966
PMCPMC3576546

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.