Evidence map›Paper›PMID 23442205›Full record

ArticleBMC genomics2013

Global analysis of transcriptional regulators in Staphylococcus aureus.

Jose Antonio Ibarra, Ernesto Pérez-Rueda, Ronan K Carroll, Lindsey N Shaw

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 70 citations in OpenAlex.

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  10. Thirty Years of sRNA-Mediated Regulation inInternational journal of molecular sciences · 2022
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  12. Screening transcriptional connections inMicrobiology (Reading, England) · 2022
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  13. The gene regulatory network ofFrontiers in microbiology · 2022
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  16. Rsp promotes the transcription of virulence factors in anEmerging microbes & infections · 2020
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  18. Revealing 29 sets of independently modulated genes inProceedings of the National Academy of Sciences of the United States of America · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Jose Antonio IbarraDepartment of Cell Biology, Microbiology and Molecular Biology, University of South Florida, 4202 East Fowler Avenue, ISA 2015, Tampa, FL 33620-5150, USA. ibarraj@usf.edu
Ernesto Pérez-Rueda
Ronan K Carroll
Lindsey N Shaw
University of South Florida · USUniversidad Nacional Autónoma de México · MX

Funding

Characterization of ??S in the stress & virulence responses of S. aureusR01AI080626 · NIAID · UNIVERSITY OF SOUTH FLORIDA · PI SHAW, LINDSEY NEIL · 2010 to 2013
$1.3M
NIAID NIH HHS AI080626NIAID NIH HHS R01 AI080626
6 · The paper itself

Abstract

backgroundStaphylococcus aureus is a widely distributed human pathogen capable of infecting almost every ecological niche of the host. As a result, it is responsible for causing many different diseases. S. aureus has a vast array of virulence determinants whose expression is modulated by an intricate regulatory network, where transcriptional factors (TFs) are the primary elements. In this work, using diverse sequence analysis, we evaluated the repertoire of TFs and sigma factors in the community-associated methicillin resistant S. aureus (CA-MRSA) strain USA300-FPR3757.

resultsA total of 135 TFs and sigma factors were identified and classified into 36 regulatory families. From these around 43% have been experimentally characterized to date, which demonstrates the significant work still at hand to unravel the regulatory network in place for this important pathogen. A comparison of the TF repertoire of S. aureus against 1209 sequenced bacterial genomes was carried out allowing us to identify a core set of orthologous TFs for the Staphylococacceae, and also allowing us to assign potential functions to previously uncharacterized TFs. Finally, the USA300 TFs were compared to those in eleven other S. aureus strains including: Newman, COL, JH1, JH9, MW2, Mu3, Mu50, N315, RF122, MRSA252 and MSSA476. We identify conserved TFs among these strains and suggest possible regulatory interactions.

conclusionsThe analysis presented herein highlights the complexity of regulatory networks in S. aureus strains, identifies key conserved TFs among the Staphylococacceae, and offers unique insights into several as yet uncharacterized TFs.

Indexed as

Genes, BacterialBacterial ProteinsGene Regulatory NetworksMethicillin-Resistant Staphylococcus aureusPhylogenySigma FactorStaphylococcus aureusTranscription FactorsBacterial ProteinsSigma FactorTranscription Factors

Identifiers

PMID23442205
PMCPMC3616918
OpenAlexW1988829615

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.