Evidence map›Paper›PMID 23442197›Full record

ArticleJournal of the American Chemical Society2013

Analysis and refactoring of the A-74528 biosynthetic pathway.

Jay T Fitzgerald, Louise K Charkoudian, Katharine R Watts, Chaitan Khosla

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.3field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. An unusual aromatase/cyclase programs the formation of the phenyldimethylanthrone framework in anthrabenzoxocinones and fasamycin.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  3. Article
  4. Review
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Jay T FitzgeraldDepartment of Chemistry, Stanford University, Stanford, California 94305, USA.
Louise K Charkoudian
Katharine R Watts
Chaitan Khosla
Stanford University · US

Funding

A Stanford - SJSU Postdoctoral Training Program to Enhance URM TeachingK12GM088033 · NIGMS · STANFORD UNIVERSITY · PI BOOTHROYD, JOHN C · 2010 to 2016
$4.1M
BACTERIAL AROMATIC POLYKETIDE SYNTHASESR01CA077248 · NCI · STANFORD UNIVERSITY · PI KHOSLA, CHAITAN · 1998 to 2011
$3.4M
Biosynthesis of Indolic Phytoalexins: Mechanisms of Plant Innate Immune ResponseR00GM089985 · NIGMS · STANFORD UNIVERSITY · PI SATTELY, ELIZABETH SUSAN · 2011 to 2013
$738k
NCI NIH HHS F32 CA137944NCI NIH HHS R01 CA 077248NCI NIH HHS R01 CA077248NIGMS NIH HHS K12 GM088033NIGMS NIH HHS K12-GM088033NIGMS NIH HHS R00 GM089985NIGMS NIH HHS R00GM089985
6 · The paper itself

Abstract

A-74528 is a C30 polyketide natural product that functions as an inhibitor of 2',5'-oligoadenylate phosphodiesterase (2'-PDE), a key regulatory enzyme of the interferon pathway. Modulation of 2'-PDE represents a unique therapeutic approach for regulating viral infections. The gene cluster responsible for biosynthesis of A-74528 yields minute amounts of this natural product together with considerably larger quantities of a structurally dissimilar C30 cytotoxic agent, fredericamycin. Through construction and analysis of a series of knockout mutants, we identified the genes necessary for A-74528 biosynthesis. Remarkably, the formation of six stereocenters and the regiospecific formation of six rings in A-74528 appear to be catalyzed by only two tailoring enzymes, a cyclase and an oxygenase, in addition to the core polyketide synthase. The inferred pathway was genetically refactored in a heterologous host, Streptomyces coelicolor CH999, to produce 3 mg/L A-74528 in the absence of fredericamycin.

Indexed as

Adenylyl CyclasesMolecular StructureOxygenasesPolycyclic CompoundsPyronesStreptomyces coelicolorA-74528Adenylyl CyclasesOxygenasesPolycyclic CompoundsPyrones

Identifiers

PMID23442197
PMCPMC3601660
OpenAlexW2003392946

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.