Evidence map›Paper›PMID 23438335›Full record

ArticleEnvironmental microbiology2013

Sewage reflects the distribution of human faecal Lachnospiraceae.

Sandra L McLellan, Ryan J Newton, Jessica L Vandewalle, Orin C Shanks, Susan M Huse, A Murat Eren, Mitchell L Sogin

Abstract read
In one paragraph

Article in Environmental microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 109 citations in OpenAlex.

  1. Article
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  4. Frontiers in bioengineering and biotechnology · 2023
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  7. Pouchitis: insight into the pathogenesis and clinical aspects.American journal of translational research · 2022
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  8. Article
  9. Article
  10. Pb Toxicity on Gut Physiology and Microbiota.Frontiers in physiology · 2021
    Review
  11. The Prokaryotic Microbiome ofMicroorganisms · 2020
    Article
  12. Article
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  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Sandra L McLellanGreat Lakes Water Institute, School of Freshwater Sciences, University of Wisconsin-Milwaukee, 600 E. Greenfield Ave, Milwaukee, WI 53204, USA. mclellan@uwm.edu
Ryan J Newton
Jessica L Vandewalle
Orin C Shanks
Susan M Huse
A Murat Eren
Mitchell L Sogin
Marine Biological Laboratory · USUniversity of Wisconsin–Milwaukee · USEnvironmental Protection Agency · US

Funding

Microbial Community Profiles Identify New Indicators of Waterborne PathogensR01AI091829 · NIAID · UNIVERSITY OF WISCONSIN MILWAUKEE · PI MCLELLAN, SANDRA L. · 2011 to 2019
$3.1M
Microbial community profiling of sewage contamination in the Great LakesR21AI076970 · NIAID · UNIVERSITY OF WISCONSIN MILWAUKEE · PI MCLELLAN, SANDRA L. · 2008 to 2010
$670k
NIAID NIH HHS 1R01AI091829-01A1NIAID NIH HHS 1R21AI076970-02NIAID NIH HHS R01 AI091829NIAID NIH HHS R21 AI076970
6 · The paper itself

Abstract

Faecal pollution contains a rich and diverse community of bacteria derived from animals and humans, many of which might serve as alternatives to the traditional enterococci and Escherichia coli faecal indicators. We used massively parallel sequencing (MPS) of the 16S rRNA gene to characterize microbial communities from wastewater treatment plant (WWTP) influent sewage from 12 cities geographically distributed across the USA. We examined members of the Clostridiales, which included the families Clostridiaceae, Lachnospiraceae and Ruminococcaceae for their potential as sewage indicators. Lachnospiraceae was one of the most abundant groups of faecal bacteria in sewage, and several Lachnospiraceae high-abundance sewage pyrotags occurred in at least 46 of 48 human faecal samples. Clone libraries targeting Clostridium coccoides (C. coccoides) in sewage samples demonstrated that Lachnospiraceae-annotated V6 pyrotags encompassed the previously reported C. coccoides group. We used oligotyping to profile the genus Blautia within Lachnospiraceae and found oligotypes comprised of 24 entropy components that showed patterns of host specificity. These findings suggest that indicators based on Blautia might have the capacity to discriminate between different faecal pollution sources. Development of source-specific alternative indicators would enhance water quality assessments, which leads to improved ecosystem health and reduced human health risk due to waterborne disease.

Indexed as

BiodiversityAnimalsBacterial Typing TechniquesCattleChickensEnvironmental MonitoringFecesGram-Positive BacteriaHumansMolecular Sequence DataPhylogenyRNA, Ribosomal, 16SSewageRNA, Ribosomal, 16SSewage

Identifiers

PMID23438335
PMCPMC4043349
OpenAlexW1541671576

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.