Evidence map›Paper›PMID 23438035›Full record

ArticleBrain pathology (Zurich, Switzerland)2013

PDGFRA amplification is common in pediatric and adult high-grade astrocytomas and identifies a poor prognostic group in IDH1 mutant glioblastoma.

Joanna J Phillips, Derick Aranda, David W Ellison, Alexander R Judkins, Sidney E Croul, Daniel J Brat, Keith L Ligon, Craig Horbinski, Sriram Venneti, Gelareh Zadeh and 16 more

Open access · bronzeAbstract read
In one paragraph

Article in Brain pathology (Zurich, Switzerland), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed, 1 pooled it
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 1 synthesis or guideline pooled it, 107 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Review
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Adolescents and Young Adults With Cancer: CNS Tumors.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2024
    Review
  16. Review
  17. Review
  18. Article
  19. Article
  20. Review

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 14 institutions in 2 countries.

Joanna J PhillipsDepartment of Pathology, University of California San Francisco, San Francisco, CA, USA. joanna.phillips@ucsf.edu
Derick Aranda
David W Ellison
Alexander R Judkins
Sidney E Croul
Daniel J Brat
Keith L Ligon
Craig Horbinski
Sriram Venneti
Gelareh Zadeh
Mariarita Santi
Shengmei Zhou
Christina L Appin
Stefano Sioletic
Lisa M Sullivan
Maria Martinez-Lage
Aaron E Robinson
William H Yong
Timothy Cloughesy
Albert Lai
Heidi S Phillips
Roxanne Marshall
Sabine Mueller
Daphne A Haas-Kogan
Annette M Molinaro
Arie Perry
University of California, San Francisco · USUniversity of California, Los Angeles · USChildren's Hospital of Los Angeles · USChildren's Hospital of Philadelphia · USEmory University · USToronto Western Hospital · CADana-Farber Cancer Institute · USGenentechHarvard University · USMemorial Sloan Kettering Cancer Center · USNeurological Surgery · USSt. Jude Children's Research Hospital · USUniversity of Kentucky · USUniversity of Pennsylvania · US

Funding

Tissue CoreP50CA097257 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Joseph F Costello · 2002 to 2026
$57.4M
Transgenic Mouse and Biobank CoreP01CA095616 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI CHIN, LYNDA · 2003 to 2012
$20.3M
Extracellular Sulfatases As Novel Biomarkers For Early Detection of CancerU01CA168878 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LEMJABBAR-ALAOUI, HASSAN, PHILLIPS, JOANNA · 2012 to 2016
$2.2M
The Significance of Isocitrate Dehydrogenase Mutations in GliomasK08CA155764 · NCI · UNIVERSITY OF KENTUCKY · PI HORBINSKI, CRAIG MICHAEL · 2011 to 2015
$857k
The role of microglia and macrophages in the development of brain tumorsK08NS063456 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI PHILLIPS, JOANNA · 2008 to 2012
$854k
NCI NIH HHS 1U01CA168878NCI NIH HHS CA097257NCI NIH HHS K08 CA155764NCI NIH HHS P01 CA095616NCI NIH HHS P01CA095616NCI NIH HHS P50 CA097257NCI NIH HHS U01 CA168878NINDS NIH HHS K08 NS063456
6 · The paper itself

Abstract

High-grade astrocytomas (HGAs), corresponding to World Health Organization grades III (anaplastic astrocytoma) and IV (glioblastoma; GBM), are biologically aggressive, and their molecular classification is increasingly relevant to clinical management. PDGFRA amplification is common in HGAs, although its prognostic significance remains unclear. Using fluorescence in situ hybridization (FISH), the most sensitive technique for detecting PDGFRA copy number gains, we determined PDGFRA amplification status in 123 pediatric and 263 adult HGAs. A range of PDGFRA FISH patterns were identified and cases were scored as non-amplified (normal and polysomy) or amplified (low-level and high-level). PDGFRA amplification was frequent in pediatric (29.3%) and adult (20.9%) tumors. Amplification was not prognostic in pediatric HGAs. In adult tumors diagnosed initially as GBM, the presence of combined PDGFRA amplification and isocitrate dehydrogenase 1 (IDH1)(R132H) mutation was a significant independent prognostic factor (P = 0.01). In HGAs, PDGFRA amplification is common and can manifest as high-level and focal or low-level amplifications. Our data indicate that the latter is more prevalent than previously reported with copy number averaging techniques. To our knowledge, this is the largest survey of PDGFRA status in adult and pediatric HGAs and suggests PDGFRA amplification increases with grade and is associated with a less favorable prognosis in IDH1 mutant de novo GBMs.

Indexed as

AdolescentAdultAstrocytomaBrain NeoplasmsChildChild, PreschoolCohort StudiesDNA Copy Number VariationsFemaleGlioblastomaHumansIsocitrate DehydrogenaseMaleMiddle AgedMutationReceptor, Platelet-Derived Growth Factor alphaIDH1 protein, humanIsocitrate DehydrogenaseReceptor, Platelet-Derived Growth Factor alphaastrocytomaFISHIDH1isocitrate dehydrogenase 1PDGFRAprognosis

Identifiers

PMID23438035
PMCPMC3715570
OpenAlexW1952429608

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.