Evidence map›Paper›PMID 23437200›Full record

ArticlePloS one2013

Identification of cellular calcium binding protein calmodulin as a regulator of rotavirus A infection during comparative proteomic study.

Shiladitya Chattopadhyay, Trayambak Basak, Mukti Kant Nayak, Gourav Bhardwaj, Anupam Mukherjee, Rahul Bhowmick, Shantanu Sengupta, Oishee Chakrabarti, Nabendu S Chatterjee, Mamta Chawla-Sarkar

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 37 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Shiladitya ChattopadhyayDivision of Virology, National Institute of Cholera and Enteric Diseases, Kolkata, West Bengal, India.
Trayambak Basak
Mukti Kant Nayak
Gourav Bhardwaj
Anupam Mukherjee
Rahul Bhowmick
Shantanu Sengupta
Oishee Chakrabarti
Nabendu S Chatterjee
Mamta Chawla-Sarkar
National Institute of Cholera and Enteric Diseases · INInstitute of Genomics and Integrative Biology · INUniversity of Calcutta · INSaha Institute of Nuclear Physics · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rotavirus (RV) being the major diarrhoegenic virus causes around 527000 children death (<5 years age) worldwide. In cellular environment, viruses constantly adapt and modulate to survive and replicate while the host cell also responds to combat the situation and this results in the differential regulation of cellular proteins. To identify the virus induced differential expression of proteins, 2D-DIGE (Two-dimensional Difference Gel Electrophoresis) based proteomics was used. For this, HT-29 cells were infected with RV strain SA11 for 0 hours, 3 hours and 9 hours post infection (hpi), differentially expressed spots were excised from the gel and identified using MALDI-TOF/TOF mass spectrometry. 2D-DIGE based proteomics study identified 32 differentially modulated proteins, of which 22 were unique. Some of these were validated in HT-29 cell line and in BALB/c mice model. One of the modulated cellular proteins, calmodulin (CaM) was found to directly interact with RV protein VP6 in the presence of Ca(2+). Ca(2+)-CaM/VP6 interaction positively regulates RV propagation since both CaM inhibitor (W-7) and Ca(2+) chelator (BAPTA-AM) resulted in decreased viral titers. This study not only identifies differentially modulated cellular proteins upon infection with rotavirus in 2D-DIGE but also confirmed positive engagement of cellular Ca(2+)/CaM during viral pathogenesis.

Indexed as

AnimalsAntigens, ViralCalciumCalmodulinCapsid ProteinsDysenteryEgtazic AcidHT29 CellsHumansMiceMice, Inbred BALB CProtein BindingRotavirusRotavirus InfectionsTwo-Dimensional Difference Gel ElectrophoresisVirus Replication1,2-bis(2-aminophenoxy)ethane N,N,N',N'-tetraacetic acid acetoxymethyl esterAntigens, ViralCalciumCalmodulinCapsid ProteinsEgtazic AcidVP6 protein, Rotavirus

Identifiers

PMID23437200
PMCPMC3577757
OpenAlexW2009370826

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.