ArticlePloS one2013
Nucleotide polymorphisms and haplotype diversity of RTCS gene in China elite maize inbred lines.
Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.
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Who cites it
6 citing papers in PubMed.
- Genetic Diversification of Starch Branching Enzymes during Maize Domestication and Improvement.Genes · 2023Article
- An evo-devo perspective on root genetic variation in cereals.Journal of experimental botany · 2017Article
- Assessment of genetic diversity among four orchids based on ddRAD sequencing data for conservation purposes.Physiology and molecular biology of plants : an international journal of functional plant biology · 2017Article
- Two major quantitative trait loci controlling the number of seminal roots in maize co-map with the root developmental genes rtcs and rum1.Journal of experimental botany · 2016Article
- Genome-wide association analysis of seedling root development in maize (Zea mays L.).BMC genomics · 2015Article
- Nucleotide diversity of Maize ZmBT1 gene and association with starch physicochemical properties.PloS one · 2014Article
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Authors and funding
6 authors.
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Abstract
The maize RTCS gene, encoding a LOB domain transcription factor, plays important roles in the initiation of embryonic seminal and postembryonic shoot-borne root. In this study, the genomic sequences of this gene in 73 China elite inbred lines, including 63 lines from 5 temperate heteroric groups and 10 tropic germplasms, were obtained, and the nucleotide polymorphisms and haplotype diversity were detected. A total of 63 sequence variants, including 44 SNPs and 19 indels, were identified at this locus, and most of them were found to be located in the regions of UTR and intron. The coding region of this gene in all tested inbred lines carried 14 haplotypes, which encoding 7 deferring RTCS proteins. Analysis of the polymorphism sites revealed that at least 6 recombination events have occurred. Among all 6 groups tested, only the P heterotic group had a much lower nucleotide diversity than the whole set, and selection analysis also revealed that only this group was under strong negative selection. However, the set of Huangzaosi and its derived lines possessed a higher nucleotide diversity than the whole set, and no selection signal were identified.
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