Evidence map›Paper›PMID 23437009›Full record

ArticlePLoS genetics2013

Discovery of a splicing regulator required for cell cycle progression.

Elena S Suvorova, Matthew Croken, Stella Kratzer, Li-Min Ting, Magnolia Conde de Felipe, Bharath Balu, Meng L Markillie, Louis M Weiss, Kami Kim, Michael W White

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.8field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 47 citations in OpenAlex.

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  16. ThemBio · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Elena S SuvorovaDepartments of Molecular Medicine and Global Health and the Florida Center for Drug Discovery and Innovation, University of South Florida, Tampa, Florida, United States of America.
Matthew Croken
Stella Kratzer
Li-Min Ting
Magnolia Conde de Felipe
Bharath Balu
Meng L Markillie
Louis M Weiss
Kami Kim
Michael W White
Albert Einstein College of Medicine · USUniversity of South Florida · USPacific Northwest National Laboratory · USSRI International · USUniversidad de Las Palmas de Gran Canaria · ES

Funding

Immunology/Pathology CoreP30AI051519 · NIAID · YESHIVA UNIVERSITY · PI GOLDSTEIN, HARRIS · 2003 to 2013
$18.6M
TRAINING PROGRAM IN CELLULAR &MOLEC. BIOLOGY &GENETICST32GM007491 · NIGMS · YESHIVA UNIVERSITY · PI QUERY, CHARLES C · 1985 to 2021
$17.0M
A Systems Biology Approach to the Model Apicomplexan Toxoplasma gondiiRC4AI092801 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI KIM, KAMI, SULLIVAN, WILLIAM J · 2010 to 2010
$5.6M
Toxoplasma Epigenomics and Gene ExpressionR01AI087625 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI KIM, KAMI · 2010 to 2014
$3.5M
The AP2 factors required for Toxoplasma replicationR01AI089885 · NIAID · UNIVERSITY OF SOUTH FLORIDA · PI WHITE, MICHAEL W · 2011 to 2015
$2.2M
Toxoplasma gondii: cyst wallR01AI095094 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI WEISS, LOUIS M. · 2012 to 2016
$2.1M
Essential Cell Cycle Mechanisms in ToxoplasmaR01AI077662 · NIAID · UNIVERSITY OF SOUTH FLORIDA · PI WHITE, MICHAEL W · 2009 to 2013
$1.8M
Microsporidiosis: Rational TherapeuticsR56AI093220 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI WEISS, LOUIS M. · 2011 to 2011
$415k
MASS SPECTROMETER SYSTEM: OBESITYS10RR019352 · NCRR · ALBERT EINSTEIN COL OF MED YESHIVA UNIV · PI ANGELETTI, RUTH HOGUE · 2004 to 2004
$379k
2D-DIGE SYSTEM FOR PROTEOMICS: SIGNAL TRANSDUCT &CELL COMMUNICAT, &CELL BIOLS10RR021056 · NCRR · ALBERT EINSTEIN COL OF MED YESHIVA UNIV · PI ANGELETTI, RUTH HOGUE · 2005 to 2005
$180k
NCRR NIH HHS 1S10RR019352NCRR NIH HHS 1S10RR021056NCRR NIH HHS S10 RR019352NCRR NIH HHS S10 RR021056NIAID NIH HHS AI93220NIAID NIH HHS P30 AI051519NIAID NIH HHS P30AI051519NIAID NIH HHS R01 AI077662NIAID NIH HHS R01AI077662NIAID NIH HHS R01 AI087625NIAID NIH HHS R01AI087625NIAID NIH HHS R01 AI089885NIAID NIH HHS R01AI089885NIAID NIH HHS R01 AI095094NIAID NIH HHS R01AI095094NIAID NIH HHS R56 AI093220NIAID NIH HHS RC4 AI092801NIAID NIH HHS RC4AI092801NIGMS NIH HHS T32 GM007491NIGMS NIH HHS T32GM007491
6 · The paper itself

Abstract

In the G1 phase of the cell division cycle, eukaryotic cells prepare many of the resources necessary for a new round of growth including renewal of the transcriptional and protein synthetic capacities and building the machinery for chromosome replication. The function of G1 has an early evolutionary origin and is preserved in single and multicellular organisms, although the regulatory mechanisms conducting G1 specific functions are only understood in a few model eukaryotes. Here we describe a new G1 mutant from an ancient family of apicomplexan protozoans. Toxoplasma gondii temperature-sensitive mutant 12-109C6 conditionally arrests in the G1 phase due to a single point mutation in a novel protein containing a single RNA-recognition-motif (TgRRM1). The resulting tyrosine to asparagine amino acid change in TgRRM1 causes severe temperature instability that generates an effective null phenotype for this protein when the mutant is shifted to the restrictive temperature. Orthologs of TgRRM1 are widely conserved in diverse eukaryote lineages, and the human counterpart (RBM42) can functionally replace the missing Toxoplasma factor. Transcriptome studies demonstrate that gene expression is downregulated in the mutant at the restrictive temperature due to a severe defect in splicing that affects both cell cycle and constitutively expressed mRNAs. The interaction of TgRRM1 with factors of the tri-SNP complex (U4/U6 & U5 snRNPs) indicate this factor may be required to assemble an active spliceosome. Thus, the TgRRM1 family of proteins is an unrecognized and evolutionarily conserved class of splicing regulators. This study demonstrates investigations into diverse unicellular eukaryotes, like the Apicomplexa, have the potential to yield new insights into important mechanisms conserved across modern eukaryotic kingdoms.

Indexed as

RNA-Binding ProteinsRNA, MessengerToxoplasmaAlternative SplicingCell CycleConserved SequenceG1 PhaseGene Expression RegulationHumansMutationNucleotide MotifsSequence Homology, Amino AcidTemperatureRNA-Binding ProteinsRNA, Messenger

Identifiers

PMID23437009
PMCPMC3578776
OpenAlexW2022430588

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.