Evidence map›Paper›PMID 23436378›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2013

Sedimentation and immunoprecipitation assays for analyzing complexes that repress transcription.

Ping Lu, Bruce S Hostager, Paul B Rothman, John D Colgan

Open access · greenAbstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Ping LuDepartment of Internal Medicine, Roy J. and Lucille A. Carver College of Medicine, University of Iowa, Iowa City, IA, USA.
Bruce S Hostager
Paul B Rothman
John D Colgan
University of Iowa · US

Funding

Role of the developmental regulator Gon4-like in B lymphopoiesisR01AI093737 · NIAID · UNIVERSITY OF IOWA · PI COLGAN, JOHN D · 2012 to 2016
$1.6M
Role of the developmental regulator Gon4-like in B lymphopoiesisR56AI093737 · NIAID · UNIVERSITY OF IOWA · PI COLGAN, JOHN D · 2011 to 2011
$378k
NIAID NIH HHS R01 AI093737NIAID NIH HHS R56 AI093737
6 · The paper itself

Abstract

Co-repressor proteins function as platforms for the assembly of multi-subunit complexes that mediate transcriptional repression. Common components of such complexes are histone deacetylases, which catalyze the removal of acetyl groups from the tails of histones within nucleosomes, resulting in chromatin compaction and gene repression. In addition, co-repressor complexes generally interact with sequence-specific DNA-binding proteins that direct association with regulatory elements in the genome. Thus, identifying proteins that stably associate with co-repressors can provide insights regarding the biochemical function and target gene specificity of these molecules. Here, we describe a density gradient fractionation method for determining whether a co-repressor is incorporated into high-molecular complexes within cells and for identifying potential constituents of these complexes. We also describe a co-immunoprecipitation assay for confirming and further studying interactions between co-repressors and other proteins that may represent functional partners.

Indexed as

Transcription, GeneticAnimalsCell Culture TechniquesCell ExtractsCell FractionationCells, CulturedCentrifugation, Density GradientElectrophoresis, Polyacrylamide GelHumansImmunoblottingImmunoprecipitationMultiprotein ComplexesNuclear ProteinsRepressor ProteinsCell ExtractsMultiprotein ComplexesNuclear ProteinsRepressor Proteins

Identifiers

PMID23436378
PMCPMC3653426
OpenAlexW38353373

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.