Evidence map›Paper›PMID 23435170›Full record

ArticleNature medicine2013

Quantitative assessment of T cell repertoire recovery after hematopoietic stem cell transplantation.

Jeroen W J van Heijst, Izaskun Ceberio, Lauren B Lipuma, Dane W Samilo, Gloria D Wasilewski, Anne Marie R Gonzales, Jimmy L Nieves, Marcel R M van den Brink, Miguel A Perales, Eric G Pamer

Abstract read
In one paragraph

Article in Nature medicine, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 122 papers.

0numbers the graph read from it
0cells of the map it votes in
122citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

122 citing papers in PubMed.

  1. Trial
  2. Analysis of the Whole CDR3 T Cell Receptor Repertoire after Hematopoietic Stem Cell Transplantation in 2 Clinical Cohorts.Biology of blood and marrow transplantation : journal of the American Society for Blood and Marrow Transplantation · 2020
    Trial
  3. Trial
  4. Trial
  5. Trial
  6. Review
  7. Article
  8. Radiomitigators: Breakthroughs in Post-Radiation Recovery.Antioxidants (Basel, Switzerland) · 2026
    Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article

62 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Jeroen W J van HeijstImmunology Program, Sloan-Kettering Institute, Memorial Sloan-Kettering Cancer Center, New York, New York, USA. vanheijj@mskcc.org
Izaskun Ceberio
Lauren B Lipuma
Dane W Samilo
Gloria D Wasilewski
Anne Marie R Gonzales
Jimmy L Nieves
Marcel R M van den Brink
Miguel A Perales
Eric G Pamer

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
T LYMPHOCYTE SUBSET FUNCTION POST-TRANSPLANTATIONP01CA023766 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI PAMER, ERIC G. · 1985 to 2023
$59.0M
TNF Mediated Immune Defense Against Listeria InfectionR01AI042135 · NIAID · YALE UNIVERSITY · PI PAMER, ERIC G. · 1998 to 2019
$7.3M
Strategies to enhance immune reconstitution after bone marrow transplantR01HL069929 · NHLBI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI VAN DEN BRINK, MARCEL R M · 2002 to 2015
$7.0M
CC-chemokines in Listeria infection.R37AI039031 · NIAID · SLOAN-KETTERING INST CAN RESEARCH · PI PAMER, ERIC G. · 2007 to 2016
$4.5M
Strategies to Enhance Lymphoid Recovery After Radiation-Induced InjuryR01AI080455 · NIAID · SLOAN-KETTERING INST CAN RESEARCH · PI VAN DEN BRINK, MARCEL R M · 2008 to 2012
$2.6M
IL-22 in Thymic RegenerationR01AI101406 · NIAID · SLOAN-KETTERING INST CAN RESEARCH · PI VAN DEN BRINK, MARCEL R M · 2012 to 2016
$2.5M
Mucosal Immunity and Microbiota in Intestinal Graft-versus-Host DiseaseR01AI100288 · NIAID · SLOAN-KETTERING INST CAN RESEARCH · PI VAN DEN BRINK, MARCEL R M · 2012 to 2016
$2.2M
Inflammation and T cell immunity to ListeriaR01AI039031 · NIAID · YALE UNIVERSITY · PI PAMER, ERIC G · 1996 to 2006
$1.9M
T cell homing in intestinal graft-versus-host diseaseR01CA107096 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI VAN DEN BRINK, MARCEL R M · 2005 to 2009
$1.6M
NCI NIH HHS CA023766NCI NIH HHS P01 CA023766NCI NIH HHS P30 CA008748NCI NIH HHS R01 CA107096NHLBI NIH HHS HL069929NHLBI NIH HHS R01 HL069929NIAID NIH HHS AI039031NIAID NIH HHS AI042135NIAID NIH HHS AI080455NIAID NIH HHS AI100288NIAID NIH HHS AI101406NIAID NIH HHS R01 AI039031NIAID NIH HHS R01 AI042135NIAID NIH HHS R01 AI080455NIAID NIH HHS R37 AI039031
6 · The paper itself

Abstract

Delayed T cell recovery and restricted T cell receptor (TCR) diversity after allogeneic hematopoietic stem cell transplantation (allo-HSCT) are associated with increased risks of infection and cancer relapse. Technical challenges have limited faithful measurement of TCR diversity after allo-HSCT. Here we combined 5' rapid amplification of complementary DNA ends PCR with deep sequencing to quantify TCR diversity in 28 recipients of allo-HSCT using a single oligonucleotide pair. Analysis of duplicate blood samples confirmed that we accurately determined the frequency of individual TCRs. After 6 months, cord blood-graft recipients approximated the TCR diversity of healthy individuals, whereas recipients of T cell-depleted peripheral-blood stem cell grafts had 28-fold and 14-fold lower CD4(+) and CD8(+) T cell diversities, respectively. After 12 months, these deficiencies had improved for the CD4(+) but not the CD8(+) T cell compartment. Overall, this method provides unprecedented views of T cell repertoire recovery after allo-HSCT and may identify patients at high risk of infection or relapse.

Indexed as

Hematopoietic Stem Cell TransplantationBase SequenceCD4-Positive T-LymphocytesCD8-Positive T-LymphocytesGenetic VariationHematologic NeoplasmsHumansReceptors, Antigen, T-CellRecurrenceSequence Analysis, DNAReceptors, Antigen, T-Cell

Identifiers

PMID23435170
PMCPMC3594333

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.