Evidence map›Paper›PMID 23434853›Full record

ArticleNature chemical biology2013

Allosteric inhibition of hypoxia inducible factor-2 with small molecules.

Thomas H Scheuermann, Qiming Li, He-Wen Ma, Jason Key, Lei Zhang, Rui Chen, Joseph A Garcia, Jacinth Naidoo, Jamie Longgood, Doug E Frantz and 3 more

Abstract read
In one paragraph

Article in Nature chemical biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 180 papers.

0numbers the graph read from it
0cells of the map it votes in
180citing papers in PubMed
8.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

180 citing papers in PubMed, 297 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. The clinical landscape of HIF2α inhibitors in oncology.Nature reviews. Clinical oncology · 2026
    Review
  5. Review
  6. The CLOCK-BMAL1 complex in circadian regulation: structure, mechanisms, and therapeutic targeting.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2026
    Review
  7. Context-dependent variability of HIF heterodimers influences interactions with macromolecular and small molecule partners.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  8. Review
  9. Small Molecule Regulation of CLOCK:BMAL1 DNA Binding Activity.bioRxiv : the preprint server for biology · 2026
    Article
  10. Review
  11. Review
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Review
  20. Review

120 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Thomas H ScheuermannDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Qiming Li
He-Wen Ma
Jason Key
Lei Zhang
Rui Chen
Joseph A Garcia
Jacinth Naidoo
Jamie Longgood
Doug E Frantz
Uttam K Tambar
Kevin H Gardner
Richard K Bruick
The University of Texas Southwestern Medical Center · USVA North Texas Health Care System · US

Funding

UT Southwestern Medical Center Simmons Comprehensive Cancer CenterP30CA142543 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI Sandi Leigh Pruitt · 2010 to 2026
$53.7M
Structure guided discovery of small molecule antagonists of Smac (DIABLO)/XIPAP01CA095471 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI WILLIAMS, NOELLE SEVILIR · 2002 to 2011
$34.1M
EXTRAMURAL RESEARCH FACILITIES CONSTRUCTIONC06RR015437 · NCRR · UNIVERSITY OF TEXAS SW MED CTR/DALLAS · PI ADAMS, PERRIE M · 2000 to 2000
$2.0M
Molecular mechanisms dictating Sirt1/HIF-2 signaling during hypoxiaR01HL108104 · NHLBI · UT SOUTHWESTERN MEDICAL CENTER · PI GARCIA, JOSEPH ANTHONY · 2011 to 2014
$1.3M
Dynamic Regulation of Erythropoietin Gene Expression in Mammals.I01BX000446 · VA · VA NORTH TEXAS HEALTH CARE SYSTEM · PI Joseph Anthony Garcia · 2009 to 2026
–
BLRD VA I01 BX000446NCI NIH HHS P01 CA095471NCI NIH HHS P30 CA142543NCRR NIH HHS C06 RR015437NCRR NIH HHS C06 RR 15437-01)NHLBI NIH HHS R01 HL108104
6 · The paper itself

Abstract

Hypoxia inducible factors (HIFs) are heterodimeric transcription factors induced in many cancers where they frequently promote the expression of protumorigenic pathways. Though transcription factors are typically considered 'undruggable', the PAS-B domain of the HIF-2α subunit contains a large cavity within its hydrophobic core that offers a unique foothold for small-molecule regulation. Here we identify artificial ligands that bind within this pocket and characterize the resulting structural and functional changes caused by binding. Notably, these ligands antagonize HIF-2 heterodimerization and DNA-binding activity in vitro and in cultured cells, reducing HIF-2 target gene expression. Despite the high sequence identity between HIF-2α and HIF-1α, these ligands are highly selective and do not affect HIF-1 function. These chemical tools establish the molecular basis for selective regulation of HIF-2, providing potential therapeutic opportunities to intervene in HIF-2-driven tumors, such as renal cell carcinomas.

Indexed as

Allosteric RegulationAntineoplastic AgentsBasic Helix-Loop-Helix ProteinsBinding SitesCell Line, TumorCrystallography, X-RayEndothelial PAS Domain-Containing Protein 1High-Throughput Screening AssaysHumansKineticsLigandsMolecular Docking SimulationNeoplasm ProteinsNuclear Magnetic Resonance, BiomolecularProtein BindingProtein Structure, TertiaryAntineoplastic AgentsBasic Helix-Loop-Helix ProteinsEndothelial PAS Domain-Containing Protein 1LigandsNeoplasm ProteinsSmall Molecule Libraries

Identifiers

PMID23434853
PMCPMC3604136
OpenAlexW2167845320

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.