Evidence map›Paper›PMID 23434852›Full record

ArticleNature chemical biology2013

Lysine and arginine biosyntheses mediated by a common carrier protein in Sulfolobus.

Takuya Ouchi, Takeo Tomita, Akira Horie, Ayako Yoshida, Kento Takahashi, Hiromi Nishida, Kerstin Lassak, Hikari Taka, Reiko Mineki, Tsutomu Fujimura and 7 more

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Article in Nature chemical biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 58 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Biosynthesis of 3-thia-α-amino acids on a carrier peptide.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  9. Encapsulins.Annual review of biochemistry · 2022
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Structural polymorphism of the Escherichia coli poly-α-L-glutamate synthetase RimK.Acta crystallographica. Section F, Structural biology communications · 2018
    Article
  17. Article
  18. Early Response ofFrontiers in microbiology · 2018
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 3 countries.

Takuya OuchiBiotechnology Research Center, The University of Tokyo, Tokyo, Japan.
Takeo Tomita
Akira Horie
Ayako Yoshida
Kento Takahashi
Hiromi Nishida
Kerstin Lassak
Hikari Taka
Reiko Mineki
Tsutomu Fujimura
Saori Kosono
Chiharu Nishiyama
Ryoji Masui
Seiki Kuramitsu
Sonja-Verena Albers
Tomohisa Kuzuyama
Makoto Nishiyama
The University of Tokyo · JPJuntendo University · JPMax Planck Institute for Terrestrial Microbiology · DEOsaka University · JPSPring-8 · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

LysW has been identified as a carrier protein in the lysine biosynthetic pathway that is active through the conversion of α-aminoadipate (AAA) to lysine. In this study, we found that the hyperthermophilic archaeon, Sulfolobus acidocaldarius, not only biosynthesizes lysine through LysW-mediated protection of AAA but also uses LysW to protect the amino group of glutamate in arginine biosynthesis. In this archaeon, after LysW modification, AAA and glutamate are converted to lysine and ornithine, respectively, by a single set of enzymes with dual functions. The crystal structure of ArgX, the enzyme responsible for modification and protection of the amino moiety of glutamate with LysW, was determined in complex with LysW. Structural comparison and enzymatic characterization using Sulfolobus LysX, Sulfolobus ArgX and Thermus LysX identify the amino acid motif responsible for substrate discrimination between AAA and glutamate. Phylogenetic analysis reveals that gene duplication events at different stages of evolution led to ArgX and LysX.

Indexed as

2-Aminoadipic AcidArchaeal ProteinsArginineBacterial ProteinsCarrier ProteinsCatalytic DomainCrystallography, X-RayEscherichia coliEvolution, MolecularGene DuplicationGlutamic AcidLysineModels, MolecularOrnithinePhylogenyProtein Binding2-Aminoadipic AcidArchaeal ProteinsArginineBacterial ProteinsCarrier ProteinsGlutamic AcidLysineOrnithineRecombinant Proteins

Identifiers

PMID23434852
OpenAlexW2014670920

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.