Evidence map›Paper›PMID 23434410›Full record

ArticleDevelopmental cell2013

A major epigenetic programming mechanism guided by piRNAs.

Xiao A Huang, Hang Yin, Sarah Sweeney, Debasish Raha, Michael Snyder, Haifan Lin

Open access · bronzeAbstract read
In one paragraph

Article in Developmental cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 142 papers.

0numbers the graph read from it
0cells of the map it votes in
142citing papers in PubMed
50.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

142 citing papers in PubMed, 244 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Genetic architecture of craniofacial morphogenesis: roles ofFrontiers in cell and developmental biology · 2026
    Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. Review
  12. Review
  13. Review
  14. Article
  15. Roles of Non-Coding RNA in Alzheimer's Disease Pathophysiology.International journal of molecular sciences · 2023
    Review
  16. Article
  17. Article
  18. Epigenetic Reprogramming and Somatic Cell Nuclear Transfer.Methods in molecular biology (Clifton, N.J.) · 2023
    Review
  19. Review
  20. Article

82 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Xiao A HuangYale Stem Cell Center and Department of Cell Biology, Yale School of Medicine, New Haven, CT 06519, USA.
Hang Yin
Sarah Sweeney
Debasish Raha
Michael Snyder
Haifan Lin
Yale Cancer Center · US

Funding

Toward a Central Question in Epigenetics: A Major Epigenetic Programming MechanisDP1CA174418 · NCI · YALE UNIVERSITY · PI LIN, HAIFAN · 2012 to 2014
$2.4M
Toward a Central Question in Epigenetics: A Major Epigenetic Programming MechanisDP1OD006825 · OD · YALE UNIVERSITY · PI LIN, HAIFAN · 2010 to 2011
$1.6M
NCI NIH HHS DP1 CA174418NCI NIH HHS DP1CA174418NIH HHS DP1 OD006825
6 · The paper itself

Abstract

A central enigma in epigenetics is how epigenetic factors are guided to specific genomic sites for their function. Previously, we reported that a Piwi-piRNA complex associates with the piRNA-complementary site in the Drosophila genome and regulates its epigenetic state. Here, we report that Piwi-piRNA complexes bind to numerous piRNA-complementary sequences throughout the genome, implicating piRNAs as a major mechanism that guides Piwi and Piwi-associated epigenetic factors to program the genome. To test this hypothesis, we demonstrate that inserting piRNA-complementary sequences to an ectopic site leads to Piwi, HP1a, and Su(var)3-9 recruitment to the site as well as H3K9me2/3 enrichment and reduced RNA polymerase II association, indicating that piRNA is both necessary and sufficient to recruit Piwi and epigenetic factors to specific genomic sites. Piwi deficiency drastically changed the epigenetic landscape and polymerase II profile throughout the genome, revealing the Piwi-piRNA mechanism as a major epigenetic programming mechanism in Drosophila.

Indexed as

EpigenomicsGenomeAnimalsAnimals, Genetically ModifiedArgonaute ProteinsChromatinChromatin ImmunoprecipitationChromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneDNA Transposable ElementsDrosophilaDrosophila ProteinsGenomicsMethyltransferasesMutationReal-Time Polymerase Chain ReactionArgonaute ProteinsChromatinChromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneDNA Transposable ElementsDrosophila ProteinsMethyltransferasespiwi protein, DrosophilaRNA, MessengerRNA Polymerase IIRNA, Small InterferingSU(VAR)3-9

Identifiers

PMID23434410
PMCPMC3600162
OpenAlexW1970698209

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.