Evidence map›Paper›PMID 23434382›Full record

ArticleJournal of autoimmunity2013

Overexpression of X-linked genes in T cells from women with lupus.

Anura Hewagama, Gabriela Gorelik, Dipak Patel, Punsisi Liyanarachchi, W Joseph McCune, Emily Somers, Tania Gonzalez-Rivera, Michigan Lupus Cohort, Faith Strickland, Bruce Richardson

Open access · greenAbstract read
In one paragraph

Article in Journal of autoimmunity, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 124 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
124citing papers in PubMed, 4 pooled it
7.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

124 citing papers in PubMed, 4 syntheses or guidelines pooled it, 221 citations in OpenAlex.

  1. An Update on the Pathogenesis of Skin Damage in Lupus.Current rheumatology reports · 2020
    Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Sex-dependent mechanisms in rheumatic diseases.Nature reviews. Rheumatology · 2026
    Review
  6. Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
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  15. Sex differences in disease: sex chromosome and immunity.Journal of translational medicine · 2024
    Review
  16. Review
  17. Article
  18. Review
  19. Review
  20. Review

64 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Anura HewagamaDepartment of Internal Medicine, Division of Rheumatology, University of Michigan, Ann Arbor, MI 48109-2200, USA. anurah@umich.edu
Gabriela Gorelik
Dipak Patel
Punsisi Liyanarachchi
W Joseph McCune
Emily Somers
Tania Gonzalez-Rivera
Michigan Lupus Cohort
Faith Strickland
Bruce Richardson
University of Michigan–Ann Arbor · USAnn Arbor VA Medical Center · USMichigan Medicine · US

Funding

MICHIGAN INSTITUTE FOR CLINICAL AND HEALTH RESEARCH (MICHR) (UL1): (BPCA)UL1RR024986 · NCRR · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SHANLEY, THOMAS P. · 2007 to 2011
$51.2M
T-CELLS AND THE INDUCTION OF LUPUSR01AR042525 · NIAMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RICHARDSON, BRUCE C. · 1993 to 2013
$3.8M
OGT Overexpression in Women with LupusR21AR056370 · NIAMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RICHARDSON, BRUCE C. · 2008 to 2009
$360k
NCRR NIH HHS UL1 RR024986NCRR NIH HHS UL1RR024986NIAMS NIH HHS AR042525NIAMS NIH HHS AR056370NIAMS NIH HHS R01 AR042525NIAMS NIH HHS R21 AR056370
6 · The paper itself

Abstract

Women develop lupus more frequently than men and the reason remains incompletely understood. Evidence that men with Klinefelter's Syndrome (XXY) develop lupus at approximately the same rate as women suggests that a second X chromosome contributes. However, since the second X is normally inactivated, how it predisposes to lupus is unclear. DNA methylation contributes to the silencing of one X chromosome in women, and CD4+ T cell DNA demethylation contributes to the development of lupus-like autoimmunity. This suggests that demethylation of genes on the inactive X may predispose women to lupus, and this hypothesis is supported by a report that CD40LG, an immune gene encoded on the X chromosome, demethylates and is overexpressed in T cells from women but not men with lupus. Overexpression of other immune genes on the inactive X may also predispose women to this disease. We therefore compared mRNA and miRNA expression profiles in experimentally demethylated T cells from women and men as well as in T cells from women and men with lupus. T cells from healthy men and women were treated with the DNA methyltransferase inhibitor 5-azacytidine, then X-linked mRNAs were surveyed with oligonucleotide arrays, and X-linked miRNA's surveyed with PCR arrays. CD40LG, CXCR3, OGT, miR-98, let-7f-2*, miR 188-3p, miR-421 and miR-503 were among the genes overexpressed in women relative to men. MiRNA target prediction analyses identified CBL, which downregulates T cell receptor signaling and is decreased in lupus T cells, as a gene targeted by miR-188-3p and miR-98. Transfection with miR-98 and miR-188-3p suppressed CBL expression. The same mRNA and miRNA transcripts were also demethylated and overexpressed in CD4+ T cells from women relative to men with active lupus. Together these results further support a role for X chromosome demethylation in the female predisposition to lupus.

Indexed as

AdultAzacitidineCD40 LigandCD4-Positive T-LymphocytesCells, CulturedDNA MethylationFemaleGenes, X-LinkedHumansImmunoblottingLeukocytes, MononuclearLupus Erythematosus, SystemicMaleMicroRNAsMiddle AgedN-AcetylglucosaminyltransferasesAzacitidineCBL protein, humanCD40 LigandCXCR3 protein, humanMicroRNAsMIRN188 microRNA, humanMIRN98 microRNA, humanN-AcetylglucosaminyltransferasesO-GlcNAc transferaseProto-Oncogene Proteins c-cblReceptors, CXCR3

Identifiers

PMID23434382
PMCPMC3622754
OpenAlexW2049977668

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.