Evidence map›Paper›PMID 23433252›Full record

ArticleMalaria journal2013

Improved assay to detect Plasmodium falciparum using an uninterrupted, semi-nested PCR and quantitative lateral flow analysis.

Serge Y Ongagna-Yhombi, Paul Corstjens, Eran Geva, William R Abrams, Cheryl A Barber, Daniel Malamud, Sungano Mharakurwa

Open access · goldAbstract read
In one paragraph

Article in Malaria journal, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Malaria diagnostic update: From conventional to advanced method.Journal of clinical laboratory analysis · 2022
    Review
  3. Rapid Detection and Differentiation ofFrontiers in chemistry · 2021
    Article
  4. Review
  5. Review
  6. Article
  7. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Serge Y Ongagna-YhombiDepartment of Basic Science, NYU College of Dentistry, New York, NY 10010, USA.
Paul Corstjens
Eran Geva
William R Abrams
Cheryl A Barber
Daniel Malamud
Sungano Mharakurwa
New York University · USJohns Hopkins University · USLeiden University Medical Center · NL

Funding

Point Detection of Pathogens in Oral Samples via UPTU01DE017855 · NIDCR · NEW YORK UNIVERSITY · PI MALAMUD, DANIEL · 2006 to 2010
$7.9M
NIDCR NIH HHS U01DE017855
6 · The paper itself

Abstract

backgroundA rapid, non-invasive, and inexpensive point-of-care (POC) diagnostic for malaria followed by therapeutic intervention would improve the ability to control infection in endemic areas.

methodsA semi-nested PCR amplification protocol is described for quantitative detection of Plasmodium falciparum and is compared to a traditional nested PCR. The approach uses primers that target the P. falciparum dihydrofolate reductase gene.

resultsThis study demonstrates that it is possible to perform an uninterrupted, asymmetric, semi-nested PCR assay with reduced assay time to detect P. falciparum without compromising the sensitivity and specificity of the assay using saliva as a testing matrix.

conclusionsThe development of this PCR allows nucleic acid amplification without the need to transfer amplicon from the first PCR step to a second reaction tube with nested primers, thus reducing both the chance of contamination and the time for analysis to < two hours. Analysis of the PCR amplicon yield was adapted to lateral flow detection using the quantitative up-converting phosphor (UCP) reporter technology. This approach provides a basis for migration of the assay to a POC microfluidic format. In addition the assay was successfully evaluated with oral samples. Oral fluid collection provides a simple non-invasive method to collect clinical samples.

Indexed as

Parasite LoadHumansMalaria, FalciparumPlasmodium falciparumPolymerase Chain ReactionSensitivity and Specificity

Identifiers

PMID23433252
PMCPMC3605351
OpenAlexW2109979945

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.