ArticleBMC genomics2013
High-density SNP-based genetic map development and linkage disequilibrium assessment in Brassica napus L.
Article in BMC genomics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 95 papers, 1 of them a synthesis that pooled it.
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Who cites it
95 citing papers in PubMed, 1 synthesis or guideline pooled it, 201 citations in OpenAlex.
- QTL meta-analysis of root traits in Brassica napus under contrasting phosphorus supply in two growth systems.Scientific reports · 2016Pooled it
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- Genome-wide association study for in vitro digestibility and related traits in triticale forage.BMC plant biology · 2024Article
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- Genome-Wide Association Studies of Salt Tolerance at the Seed Germination Stage and Yield-Related Traits inInternational journal of molecular sciences · 2022Article
- Linkage disequilibrium and population structure in a core collection of Brassica napus (L.).PloS one · 2022Article
- Genomic background selection to reduce the mutation load after random mutagenesis.Scientific reports · 2021Article
- A gene-for-gene interaction involving a 'late' effector contributes to quantitative resistance to the stem canker disease in Brassica napus.The New phytologist · 2021Article
- Genotyping-by-Sequencing-Based Genome-Wide Association Studies of Fusarium Wilt Resistance in Radishes (Genes · 2021Article
- mixIndependR: a R package for statistical independence testing of loci in database of multi-locus genotypes.BMC bioinformatics · 2021Article
- Omics: The way forward to enhance abiotic stress tolerance inGM crops & food · 2021Review
- TheFrontiers in plant science · 2021Article
- Long-read assembly of the Brassica napus reference genome Darmor-bzh.GigaScience · 2020Article
35 more citing papers are in PubMed but not listed here.
Corrections and comments
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Authors and funding
18 authors at 4 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundHigh density genetic maps built with SNP markers that are polymorphic in various genetic backgrounds are very useful for studying the genetics of agronomical traits as well as genome organization and evolution. Simultaneous dense SNP genotyping of segregating populations and variety collections was applied to oilseed rape (Brassica napus L.) to obtain a high density genetic map for this species and to study the linkage disequilibrium pattern.
resultsWe developed an integrated genetic map for oilseed rape by high throughput SNP genotyping of four segregating doubled haploid populations. A very high level of collinearity was observed between the four individual maps and a large number of markers (>59%) was common to more than two maps. The precise integrated map comprises 5764 SNP and 1603 PCR markers. With a total genetic length of 2250 cM, the integrated map contains a density of 3.27 markers (2.56 SNP) per cM. Genotyping of these mapped SNP markers in oilseed rape collections allowed polymorphism level and linkage disequilibrium (LD) to be studied across the different collections (winter vs spring, different seed quality types) and along the linkage groups. Overall, polymorphism level was higher and LD decayed faster in spring than in "00" winter oilseed rape types but this was shown to vary greatly along the linkage groups.
conclusionsOur study provides a valuable resource for further genetic studies using linkage or association mapping, for marker assisted breeding and for Brassica napus sequence assembly and genome organization analyses.
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