Evidence map›Paper›PMID 23431144›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Leucyl-tRNA synthetase editing domain functions as a molecular rheostat to control codon ambiguity in Mycoplasma pathogens.

Li Li, Andrés Palencia, Tiit Lukk, Zhi Li, Zaida A Luthey-Schulten, Stephen Cusack, Susan A Martinis, Michal T Boniecki

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. tRNA synthetase: tRNA aminoacylation and beyond.Wiley interdisciplinary reviews. RNA
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Li LiCenter for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Andrés Palencia
Tiit Lukk
Zhi Li
Zaida A Luthey-Schulten
Stephen Cusack
Susan A Martinis
Michal T Boniecki

Funding

tRNA Synthetase Fidelity MechanismsR01GM063789 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI MARTINIS, SUSAN A · 2001 to 2014
$3.3M
VIRTUAL REALITY &ADVANCED PROCESSING OF FMRI DATAP41RR005964 · NCRR · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI FREED, JACK H · 1990 to 2000
$775k
NCRR NIH HHS P41RR05964NIGMS NIH HHS GM063789NIGMS NIH HHS R01 GM063789
6 · The paper itself

Abstract

Mycoplasma leucyl-tRNA synthetases (LeuRSs) have been identified in which the connective polypeptide 1 (CP1) amino acid editing domain that clears mischarged tRNAs are missing (Mycoplasma mobile) or highly degenerate (Mycoplasma synoviae). Thus, these enzymes rely on a clearance pathway called pretransfer editing, which hydrolyzes misactivated aminoacyl-adenylate intermediate via a nebulous mechanism that has been controversial for decades. Even as the sole fidelity pathway for clearing amino acid selection errors in the pathogenic M. mobile, pretransfer editing is not robust enough to completely block mischarging of tRNA(Leu), resulting in codon ambiguity and statistical proteins. A high-resolution X-ray crystal structure shows that M. mobile LeuRS structurally overlaps with other LeuRS cores. However, when CP1 domains from different aminoacyl-tRNA synthetases and origins were fused to this common LeuRS core, surprisingly, pretransfer editing was enhanced. It is hypothesized that the CP1 domain evolved as a molecular rheostat to balance multiple functions. These include distal control of specificity and enzyme activity in the ancient canonical core, as well as providing a separate hydrolytic active site for clearing mischarged tRNA.

Indexed as

Amino Acid SequenceBacterial ProteinsCodonCrystallography, X-RayLeucine-tRNA LigaseModels, MolecularMolecular Sequence DataMycoplasmaMycoplasma synoviaeProtein ConformationProtein Structure, TertiaryRecombinant Fusion ProteinsRNA, BacterialRNA EditingRNA, Transfer, LeuSequence Homology, Amino AcidBacterial ProteinsCodonLeucine-tRNA LigaseRecombinant Fusion ProteinsRNA, BacterialRNA, Transfer, Leu

Identifiers

PMID23431144
PMCPMC3593832

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.