Evidence map›Paper›PMID 23430255›Full record

ArticleThe Journal of biological chemistry2013

Functional identification of a hydroxyproline-o-galactosyltransferase specific for arabinogalactan protein biosynthesis in Arabidopsis.

Debarati Basu, Yan Liang, Xiao Liu, Klaus Himmeldirk, Ahmed Faik, Marcia Kieliszewski, Michael Held, Allan M Showalter

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
19.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 105 citations in OpenAlex.

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  15. Cracking the "Sugar Code": A Snapshot ofFrontiers in plant science · 2021
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  18. Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Debarati BasuDepartment of Environmental and Plant Biology, Molecular and Cellular Biology Program, Ohio University, Athens, Ohio 45701-2979.
Yan LiangDepartment of Environmental and Plant Biology, Molecular and Cellular Biology Program, Ohio University, Athens, Ohio 45701-2979.
Xiao LiuDepartment of Environmental and Plant Biology, Molecular and Cellular Biology Program, Ohio University, Athens, Ohio 45701-2979.
Klaus HimmeldirkDepartment of Chemistry and Biochemistry, Molecular and Cellular Biology Program, Ohio University, Athens, Ohio 45701-2979.
Ahmed FaikDepartment of Environmental and Plant Biology, Molecular and Cellular Biology Program, Ohio University, Athens, Ohio 45701-2979.
Marcia KieliszewskiDepartment of Chemistry and Biochemistry, Molecular and Cellular Biology Program, Ohio University, Athens, Ohio 45701-2979.
Michael HeldDepartment of Chemistry and Biochemistry, Molecular and Cellular Biology Program, Ohio University, Athens, Ohio 45701-2979.
Allan M ShowalterDepartment of Environmental and Plant Biology, Molecular and Cellular Biology Program, Ohio University, Athens, Ohio 45701-2979. Electronic address: showalte@ohio.edu.
Ohio University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although plants contain substantial amounts of arabinogalactan proteins (AGPs), the enzymes responsible for AGP glycosylation are largely unknown. Bioinformatics indicated that AGP galactosyltransferases (GALTs) are members of the carbohydrate-active enzyme glycosyltransferase (GT) 31 family (CAZy GT31) involved in N- and O-glycosylation. Six Arabidopsis GT31 members were expressed in Pichia pastoris and tested for enzyme activity. The At4g21060 gene (named AtGALT2) was found to encode activity for adding galactose (Gal) to hydroxyproline (Hyp) in AGP protein backbones. AtGALT2 specifically catalyzed incorporation of [(14)C]Gal from UDP-[(14)C]Gal to Hyp of model substrate acceptors having AGP peptide sequences, consisting of non-contiguous Hyp residues, such as (Ala-Hyp) repetitive units exemplified by chemically synthesized (AO)7 and anhydrous hydrogen fluoride-deglycosylated d(AO)51. Microsomal preparations from Pichia cells expressing AtGALT2 incorporated [(14)C]Gal to (AO)7, and the resulting product co-eluted with (AO)7 by reverse-phase HPLC. Acid hydrolysis of the [(14)C]Gal-(AO)7 product released (14)C-radiolabel as Gal only. Base hydrolysis of the [(14)C]Gal-(AO)7 product released a (14)C-radiolabeled fragment that co-eluted with a Hyp-Gal standard after high performance anion-exchange chromatography fractionation. AtGALT2 is specific for AGPs because substrates lacking AGP peptide sequences did not act as acceptors. Moreover, AtGALT2 uses only UDP-Gal as the substrate donor and requires Mg(2+) or Mn(2+) for high activity. Additional support that AtGALT2 encodes an AGP GALT was provided by two allelic AtGALT2 knock-out mutants, which demonstrated lower GALT activities and reductions in β-Yariv-precipitated AGPs compared with wild type plants. Confocal microscopic analysis of fluorescently tagged AtGALT2 in tobacco epidermal cells indicated that AtGALT2 is probably localized in the endomembrane system consistent with its function.

Indexed as

Gene Expression Regulation, EnzymologicGene Expression Regulation, PlantArabidopsisArabidopsis ProteinsCatalysisCell WallChromatography, Ion ExchangeCloning, MolecularGalactansGalactosyltransferasesGlycosylationHydroxyprolineImmunoblottingMicroscopy, ConfocalMicrosomesMolecular ConformationArabidopsis ProteinsarabinogalactanGalactansGalactosyltransferasesHydroxyprolineUDP-D-galactose hydroxyproline O-galactosyltransferase, Arabidopsis

Identifiers

PMID23430255
PMCPMC3617256
OpenAlexW1997956087

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.