ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2013
Population structure, genetic diversity and linkage disequilibrium in elite winter wheat assessed with SNP and SSR markers.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers.
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Who cites it
81 citing papers in PubMed.
- Comparison of Heterozygosity and Genetic Diversity Between Wild and Domesticated Macadamia.Biology · 2026Article
- Next-generation SNPs from lignin biosynthesis gene and transcription factors reveal a hidden teak (Frontiers in genetics · 2026Article
- Genome-Wide Association Studies of Key Traits inGenes · 2025Article
- Impact of structural variations and genome partitioning on bread wheat hybrid performance.Functional & integrative genomics · 2025Article
- LOGOWheat: deep learning-based prediction of regulatory effects for noncoding variants in wheats.Briefings in bioinformatics · 2024Article
- Genome-Wide Development of InDel-SSRs and Association Analysis of Important Agronomic Traits of Taro (Current issues in molecular biology · 2024Article
- Wheat improvement through advances in single nucleotide polymorphism (SNP) detection and genotyping with a special emphasis on rust resistance.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Review
- Identifying the physiological traits associated with DNA marker using genome wide association in wheat under heat stress.Scientific reports · 2024Article
- Validation of sorghum quality control (QC) markers across African breeding lines.The plant genome · 2024Article
- Genetic Diversity and Genome-Wide Association Study for the Phenology Response of Winter Wheats of North America, Western Asia, and Europe.Plants (Basel, Switzerland) · 2023Article
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- Large-scale genotyping and phenotyping of a worldwide winter wheat genebank for its use in pre-breeding.Scientific data · 2022Article
- Genomics-informed prebreeding unlocks the diversity in genebanks for wheat improvement.Nature genetics · 2022Article
- Characterization and QTL Mapping of a Major Field Resistance Locus for Bacterial Blight in Rice.Plants (Basel, Switzerland) · 2022Article
- The Population Structure of a Globe Artichoke Worldwide Collection, as Revealed by Molecular and Phenotypic Analyzes.Frontiers in plant science · 2022Article
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- Population structure and genetic diversity characterization of soybean for seed longevity.PloS one · 2022Article
- Optimizing the setup of multienvironmental hybrid wheat yield trials for boosting the selection capability.The plant genome · 2021Article
- LegumeSSRdb: A Comprehensive Microsatellite Marker Database of Legumes for Germplasm Characterization and Crop Improvement.International journal of molecular sciences · 2021Article
- The effects of crop attributes, selection, and recombination on Canadian bread wheat molecular variation.The plant genome · 2021Article
21 more citing papers are in PubMed but not listed here.
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10 authors.
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Abstract
Modern genomics approaches rely on the availability of high-throughput and high-density genotyping platforms. A major breakthrough in wheat genotyping was the development of an SNP array. In this study, we used a diverse panel of 172 elite European winter wheat lines to evaluate the utility of the SNP array for genomic analyses in wheat germplasm derived from breeding programs. We investigated population structure and genetic relatedness and found that the results obtained with SNP and SSR markers differ. This suggests that additional research is required to determine the optimum approach for the investigation of population structure and kinship. Our analysis of linkage disequilibrium (LD) showed that LD decays within approximately 5-10 cM. Moreover, we found that LD is variable along chromosomes. Our results suggest that the number of SNPs needs to be increased further to obtain a higher coverage of the chromosomes. Taken together, SNPs can be a valuable tool for genomics approaches and for a knowledge-based improvement of wheat.
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