Evidence map›Paper›PMID 23429745›Full record

ArticleMicrobiology (Reading, England)2013

Central metabolism controls transcription of a virulence gene regulator in Vibrio cholerae.

Yusuke Minato, Sara R Fassio, Alan J Wolfe, Claudia C Häse

Open access · greenAbstract read
In one paragraph

Article in Microbiology (Reading, England), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 53 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Characterization of the ferric uptake regulatorApplied and environmental microbiology · 2024
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. TheFrontiers in microbiology · 2021
    Article
  12. Article
  13. NamBio · 2020
    Article
  14. Article
  15. Article
  16. Article
  17. A MesophilicMicroorganisms · 2019
    Article
  18. mBio · 2019
    Article
  19. Indole Inhibits ToxR Regulon Expression inInfection and immunity · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Yusuke MinatoDepartment of Biomedical Sciences, College of Veterinary Medicine, Oregon State University, Corvallis, OR, USA.
Sara R FassioDepartment of Microbiology, College of Science, Oregon State University, Corvallis, OR, USA.
Alan J WolfeDepartment of Microbiology and Immunology, Health Sciences Division, Loyola University Chicago, Maywood, IL, USA.
Claudia C HäseDepartment of Microbiology, College of Science, Oregon State University, Corvallis, OR, USA.
Oregon State University · USLoyola University Chicago · US

Funding

Sensing central metabolic stressR01GM066130 · NIGMS · LOYOLA UNIVERSITY CHICAGO · PI WOLFE, ALAN J · 2004 to 2012
$2.7M
Howard Hughes Medical InstituteNIAID NIH HHS AI-063121-02NIGMS NIH HHS GM066130NIGMS NIH HHS R01 GM066130
6 · The paper itself

Abstract

ToxT is the central regulatory protein involved in activation of the main virulence genes in Vibrio cholerae. We have identified transposon insertions in central metabolism genes, whose disruption increases toxT transcription. These disrupted genes encode the primary respiration-linked sodium pump (NADH:ubiquinone oxidoreductase or NQR) and certain tricarboxylic acid (TCA) cycle enzymes. Observations made following stimulation of respiration in the nqr mutant or chemical inhibition of NQR activity in the TCA cycle mutants led to the hypothesis that NQR affects toxT transcription via the TCA cycle. That toxT transcription increased when the growth medium was supplemented with citrate, but decreased with oxaloacetate, focused our attention on the TCA cycle substrate acetyl-CoA and its non-TCA cycle metabolism. Indeed, both the nqr and the TCA cycle mutants increased acetate excretion. A similar correlation between acetate excretion and toxT transcription was observed in a tolC mutant and upon amino acid (NRES) supplementation. As acetate and its tendency to decrease pH exerted no strong effect on toxT transcription, and because disruption of the major acetate excretion pathway increased toxT transcription, we propose that toxT transcription is regulated by either acetyl-CoA or some close derivative.

Indexed as

Gene Expression Regulation, BacterialAcetatesAcetyl Coenzyme AAmino AcidsBacterial ProteinsCitric AcidCitric Acid CycleCulture MediaDNA Transposable ElementsMutagenesis, InsertionalOxygen ConsumptionTranscription FactorsVibrio cholerae O1VirulenceAcetatesAcetyl Coenzyme AAmino AcidsBacterial ProteinsCitric AcidCulture MediaDNA Transposable ElementstcpN protein, Vibrio choleraeTranscription Factors

Identifiers

PMID23429745
PMCPMC3709826
OpenAlexW2101834571

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.