Evidence map›Paper›PMID 23429503›Full record

ArticleJournal of acquired immune deficiency syndromes (1999)2013

Simian immunodeficiency virus infection potently modulates chemokine networks and immune environments in hilar lymph nodes of cynomolgus macaques.

Shulin Qin, Beth A F Junecko, Carissa M Lucero, Cynthia R Klamar, Anita M Trichel, Michael A Murphey-Corb, Patrick M Tarwater, Denise E Kirschner, Todd A Reinhart

Open access · greenAbstract read
In one paragraph

Article in Journal of acquired immune deficiency syndromes (1999), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Shulin QinDepartment of Infectious Diseases and Microbiology, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA 15261, USA.
Beth A F Junecko
Carissa M Lucero
Cynthia R Klamar
Anita M Trichel
Michael A Murphey-Corb
Patrick M Tarwater
Denise E Kirschner
Todd A Reinhart
University of Pittsburgh · USTexas Tech University Health Sciences Center · USUniversity of Michigan–Ann Arbor · US

Funding

Chemokine Modulation During SIV Infection &AIDSR01AI060422 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI REINHART, TODD A · 2005 to 2009
$2.6M
Chemokine Dynamics in the HIV-1/SIV Infected LungR01HL072682 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KIRSCHNER, DENISE E · 2002 to 2006
$2.6M
NHLBI NIH HHS R01 HL072682NIAID NIH HHS R01 AI060422
6 · The paper itself

Abstract

backgroundChemokines provide critical immune cell homing and activation signals that if altered could affect the inflammatory milieu and cellular composition of lymphoid tissues. During HIV-1 and simian immunodeficiency virus (SIV)-infection, the virus triggers an increase in inflammation or activation, leading to immunodeficiency and development of opportunistic infections, such as in the lungs-a massive interface between the host and the environment.

methodsChemokine, cytokine, and chemokine receptor expression profiles were determined using real-time reverse transcriptase-polymerase chain reaction and in situ hybridization in hilar lymph nodes (HiLNs) from cynomolgus macaques at different stages after infection with SIV/DeltaB670. Immunostaining of tissue sections and flow cytometric analysis of cryopreserved cells were used to examine cellular compositions of lymph nodes.

resultsInterferon-gamma, type 1 chemokine, and cognate chemokine receptor mRNAs were upregulated, whereas type 2 and homeostatic chemokine and chemokine receptor mRNAs were down-regulated in HiLNs after SIV infection. Local SIV and interferon-gamma levels were positively correlated with type 1 chemokine levels but negatively correlated with type 2 and homeostatic chemokine levels. Using in situ hybridization, Pneumocystis carinii rRNA was detected in lung-draining lymph nodes from animals with P. carinii pneumonia. Changes in the cellular composition of HiLNs included decreased proportions of CD4 cells and dendritic cells and increased proportions of CD8, CXCR3, and CCR5 cells.

conclusionsSIV infection of cynomolgus macaques dramatically alters the cellular homing signals of lung-draining lymph nodes, which correlated with changes in the immune cellular composition. These changes could contribute to the loss of immune function that defines AIDS.

Indexed as

AnimalsCD4 Lymphocyte CountCD4-Positive T-LymphocytesCD8-Positive T-LymphocytesChemokinesDendritic CellsForkhead Transcription FactorsInterferon-gammaLungLymph NodesMacaca fascicularisNuclear Receptor Subfamily 1, Group F, Member 3Pneumocystis cariniiReceptors, ChemokineRNA, BacterialRNA, MessengerChemokinesForkhead Transcription FactorsInterferon-gammaNuclear Receptor Subfamily 1, Group F, Member 3Receptors, ChemokineRNA, BacterialRNA, MessengerRNA, Ribosomal

Identifiers

PMID23429503
PMCPMC3688692
OpenAlexW1981740719

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.