Evidence map›Paper›PMID 23427157›Full record

ArticleJournal of virology2013

Formation of covalently modified folding intermediates of simian virus 40 Vp1 in large T antigen-expressing cells.

Marika Watanabe, Ellen Phamduong, Chu-Han Huang, Noriko Itoh, Janie Bernal, Akira Nakanishi, Kathleen Rundell, Ole Gjoerup, Harumi Kasamatsu

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed, 1 pooled it
0.1field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 synthesis or guideline pooled it, 2 citations in OpenAlex.

  1. The cellular model for Alzheimer's disease research: PC12 cells.Frontiers in molecular neuroscience · 2022
    Pooled it
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Marika WatanabeDepartment of Molecular, Cell and Developmental Biology and Molecular Biology Institute, University of California at Los Angeles, Los Angeles, California, USA.
Ellen Phamduong
Chu-Han Huang
Noriko Itoh
Janie Bernal
Akira Nakanishi
Kathleen Rundell
Ole Gjoerup
Harumi Kasamatsu
University of California, Los Angeles · USNational Center for Geriatrics and Gerontology · JPNorthwestern University · USTufts Medical Center · US

Funding

ASSEMBLY AND MORPHOGENESIS OF DNA TUMOR VIRUSESR01CA050574 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI KASAMATSU, HARUMI · 1990 to 2006
$1.9M
SV40 Small-t Antigen and Human Cell TransformationR01CA021327 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI RUNDELL, M KATHLEEN · 1985 to 2006
$1.8M
Role of Bub1 in SV40 large T antigen mediated transformation and replicationR01AI078926 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GJOERUP, OLE · 2008 to 2011
$1.5M
NCI NIH HHS CA21327NCI NIH HHS CA50574NCI NIH HHS R01 CA021327NCI NIH HHS R01 CA050574NIAID NIH HHS AI078926NIAID NIH HHS R01 AI078926
6 · The paper itself

Abstract

The folding and pentamer assembly of the simian virus 40 (SV40) major capsid protein Vp1, which take place in the infected cytoplasm, have been shown to progress through disulfide-bonded Vp1 folding intermediates. In this report, we further demonstrate the existence of another category of Vp1 folding or assembly intermediates: the nonreducible, covalently modified mdVp1s. These species were present in COS-7 cells that expressed a recombinant SV40 Vp1, Vp1ΔC, through plasmid transfection. The mdVp1s persisted under cell and lysate treatment and SDS-PAGE conditions that are expected to have suppressed the formation of artifactual disulfide cross-links. As shown through a pulse-chase analysis, the mdVp1s were derived from the newly synthesized Vp1ΔC in the same time frame as Vp1's folding and oligomerization. The apparent covalent modifications occurred in the cytoplasm within the core region of Vp1 and depended on the coexpression of the SV40 large T antigen (LT) in the cells. Analogous covalently modified species were found with the expression of recombinant polyomavirus Vp1s and human papillomavirus L1s in COS-7 cells. Furthermore, the mdVp1s formed multiprotein complexes with LT, Hsp70, and Hsp40, and a fraction of the largest mdVp1, md4, was disulfide linked to the unmodified Vp1ΔC. Both mdVp1 formation and most of the multiprotein complex formation were blocked by a Vp1 folding mutation, C87A-C254A. Our observations are consistent with a role for LT in facilitating the folding process of SV40 Vp1 by stimulating certain covalent modifications of Vp1 or by recruiting certain cellular proteins.

Indexed as

AnimalsAntigens, Viral, TumorCapsid ProteinsCell LineChlorocebus aethiopsCOS CellsHumansPolyomavirus InfectionsProtein FoldingSimian virus 40Antigens, Viral, TumorCapsid ProteinsVP1 protein, polyomavirus

Identifiers

PMID23427157
PMCPMC3624288
OpenAlexW2150841295

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.