Evidence map›Paper›PMID 23426922›Full record

ArticleJournal of clinical microbiology2013

Multicenter quality control of hepatitis C virus protease inhibitor resistance genotyping.

Sophie Vallet, Sylvie Larrat, Syria Laperche, Hélène Le Guillou-Guillemette, Florence Legrand-Abravanel, Françoise Bouchardeau, Adeline Pivert, Cécile Henquell, Audrey Mirand, Elisabeth André-Garnier and 27 more

Abstract readMulticenter Study
In one paragraph

Article in Journal of clinical microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

37 authors.

Sophie ValletUniversité de Brest, UFR Médecine et des Sciences de la Santé, LUBEM, Brest, France. sophie.vallet@chu-brest.fr
Sylvie Larrat
Syria Laperche
Hélène Le Guillou-Guillemette
Florence Legrand-Abravanel
Françoise Bouchardeau
Adeline Pivert
Cécile Henquell
Audrey Mirand
Elisabeth André-Garnier
Valérie Giordanengo
Gisèle Lagathu
Vincent Thibault
Caroline Scholtes
Evelyne Schvoerer
Catherine Gaudy-Graffin
Sarah Maylin
Pascale Trimoulet
Etienne Brochot
Sébastien Hantz
Joël Gozlan
Anne-Marie Roque-Afonso
Patrick Soussan
Jean-Christophe Plantier
Charlotte Charpentier
Stéphane Chevaliez
Philippe Colson
Vincent Mackiewicz
Lina Aguilera
Sylvain Rosec
Stéphanie Gouriou
Nelly Magnat
Françoise Lunel-Fabiani
Jacques Izopet
Patrice Morand
Christopher Payan
Jean-Michel Pawlotsky

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hepatitis C virus (HCV) protease inhibitor resistance-associated substitutions are selected during triple-therapy breakthrough. This multicenter quality control study evaluated the expertise of 23 French laboratories in HCV protease inhibitor resistance genotyping. A panel of 12 well-defined blinded samples comprising two wild-type HCV strains, nine transcripts from synthetic NS3 mutant samples or from clinical strains, and one HCV RNA-negative sample was provided to the participating laboratories. The results showed that any laboratory with expertise in sequencing techniques should be able to provide reliable HCV protease inhibitor resistance genotyping. Only a 0.7% error rate was reported for the amino acid sites studied. The accuracy of substitution identification ranged from 75% to 100%, depending on the laboratory. Incorrect results were mainly related to the methodology used. The results could be improved by changing the primers and modifying the process in order to avoid cross-contamination. This study underlines the value of quality control programs for viral resistance genotyping, which is required prior to launching observational collaborative multicenter studies on HCV resistance to direct-acting antiviral agents.

Indexed as

Amino Acid SequenceAntiviral AgentsBase SequenceDEAD-box RNA HelicasesDrug Resistance, ViralGenotypeHepacivirusMutationNucleoside-TriphosphataseProtease InhibitorsQuality ControlSequence Analysis, DNASerine EndopeptidasesViral Nonstructural ProteinsViral ProteasesAntiviral AgentsDEAD-box RNA HelicasesNS3 protein, hepatitis C virusNucleoside-TriphosphataseProtease InhibitorsSerine EndopeptidasesViral Nonstructural ProteinsViral Proteases

Identifiers

PMID23426922
PMCPMC3647889

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.