Evidence map›Paper›PMID 23425854›Full record

ArticlePlant signaling & behavior2013

A conserved basic residue cluster is essential for the protein quality control function of the Arabidopsis calreticulin 3.

Yidan Liu, Jianming Li

Open access · bronzeAbstract read
In one paragraph

Article in Plant signaling & behavior, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it, 11 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. RNAi-Mediated Knockdown of Calreticulin3a Impairs Pollen Tube Growth inInternational journal of molecular sciences · 2022
    Article
  4. Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 2 countries.

Yidan LiuDepartment of Molecular, Cellular, and Developmental Biology; University of Michigan; Ann Arbor, MI USA.
Jianming Li
Institut thématique Génétique, génomique et bioinformatique · FRUniversity of Michigan–Ann Arbor · US

Funding

MOLECULAR GENETIC STUDIES OF PLANT STEROID SIGNALINGR01GM060519 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LI, JIANMING · 2000 to 2008
$2.3M
NIGMS NIH HHS GM060519NIGMS NIH HHS R01 GM060519
6 · The paper itself

Abstract

Calreticulin (CRT) is a highly conserved chaperone-like lectin that regulates Ca(2+) homeostasis and participates in protein quality control in the endoplasmic reticulum (ER). Most of our CRT knowledge came from mammalian studies, but our understanding of plant CRTs is limited. Many plants contain more than two CRTs that form two distinct groups: CRT1/CRT2 and CRT3. Previous studies on plant CRTs were focused on their Ca(2+)-binding function, but recent studies revealed a crucial role for the Arabidopsis CRT3 in ER retention of a mutant brassinosteroid receptor, brassinosteroid-insensitive 1-9 (bri1-9) and in complete folding of a plant immunity receptor EF-Tu Receptor (EFR). However, little is known about the molecular basis of the functional specification of the CRTs. We have recently shown that the C-terminal domain of CRT3, which is rich in basic residues, is essential for retaining bri1-9 in the ER; however, its role in assisting EFR folding has not been studied. Here, we used an insertional mutant of CRT3, ebs2-8 (EMS mutagenized bri1 suppressor 2-8), in the bri1-9 background as a genetic system to investigate the functional importance of two basic residue clusters in the CRT3's C-terminal domain. Complementation experiments of ebs2-8 bri1-9 with mutant CRT3(M) transgenes showed that a highly conserved basic tetrapeptide Arg(392)Arg (393)Arg(394)Lys(395) is essential but a less conserved basic tetrapeptide Arg(401)Arg(402)Arg(403)Arg(404) is dispensable for the quality control function of CRT3 that retains bri1-9 in the ER and facilitates the complete folding of EFR.

Indexed as

Conserved SequenceAmino Acid SequenceArabidopsisArabidopsis ProteinsCalreticulinEndoplasmic ReticulumGenes, PlantMolecular Sequence DataMutationPeptide Elongation Factor TuPlant ImmunityPlant LectinsProtein FoldingProtein KinasesProtein Structure, TertiaryTransgenesArabidopsis ProteinsBRI1 protein, ArabidopsisCalreticulincalreticulin 3, ArabidopsisPeptide Elongation Factor TuPlant LectinsProtein Kinasesbrassinosteroidchaperone-like lectinplant innate immunityprotein foldingprotein quality controlreceptor kinase

Identifiers

PMID23425854
PMCPMC3956487
OpenAlexW2015446934

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.