Evidence map›Paper›PMID 23425124›Full record

ArticleBioconjugate chemistry2013

A highly efficient catalyst for oxime ligation and hydrazone-oxime exchange suitable for bioconjugation.

Mohammad Rashidian, Mohammad M Mahmoodi, Rachit Shah, Jonathan K Dozier, Carston R Wagner, Mark D Distefano

Open access · greenAbstract read
In one paragraph

Article in Bioconjugate chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
9.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 112 citations in OpenAlex.

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  16. Borylated oximes: versatile building blocks for organic synthesis.Chemical communications (Cambridge, England) · 2017
    Article
  17. Review
  18. Article
  19. Article
  20. Site-Specific PEGylation of Therapeutic Proteins.International journal of molecular sciences · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Mohammad RashidianDepartment of Chemistry, University of Minnesota, Minneapolis, MN 55455, USA.
Mohammad M Mahmoodi
Rachit Shah
Jonathan K Dozier
Carston R Wagner
Mark D Distefano
University of Minnesota · US

Funding

MECHANISM AND FUNCTION OF PROTEIN PRENYLATIONR01GM058842 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI DISTEFANO, MARK D · 1998 to 2010
$2.6M
Enzymatic Protein LabelingR01GM084152 · NIGMS · UNIVERSITY OF MINNESOTA · PI DISTEFANO, MARK D · 2010 to 2019
$2.6M
Self-Assemblying Immunotherapeutic NanoringsR01CA125360 · NCI · UNIVERSITY OF MINNESOTA · PI WAGNER, CARSTON R. · 2008 to 2011
$1.2M
NCI NIH HHS R01 CA125360NIGMS NIH HHS GM058842NIGMS NIH HHS GM084152NIGMS NIH HHS R01 GM058842NIGMS NIH HHS R01 GM084152
6 · The paper itself

Abstract

Imine-based reactions are useful for a wide range of bioconjugation applications. Although aniline is known to catalyze the oxime ligation reaction under physiological conditions, it suffers from slow reaction kinetics, specifically when a ketone is being used or when hydrazone-oxime exchange is performed. Here, we report on the discovery of a new catalyst that is up to 15 times more efficient than aniline. That catalyst, m-phenylenediamine (mPDA), was initially used to analyze the kinetics of oxime ligation on aldehyde- and ketone-containing small molecules. While mPDA is only modestly more effective than aniline when used in equal concentrations (~2-fold), its much greater aqueous solubility relative to aniline allows it to be used at higher concentrations, resulting in significantly more efficient catalysis. In the context of protein labeling, it was first used to site-specifically label an aldehyde-functionalized protein through oxime ligation, and its kinetics were compared to reaction with aniline. Next, a protein was labeled with an aldehyde-containing substrate in crude cell lysate, captured with hydrazide-functionalized beads and then the kinetics of immobilized protein release via hydrazone-oxime exchange were analyzed. Our results show that mPDA can release and label 15 times more protein than aniline can in 3 h. Then, using the new catalyst, ciliary neurotrophic factor, a protein with therapeutic potential, was successfully labeled with a fluorophore in only 5 min. Finally, a protein containing the unnatural amino acid, p-acetyl phenylalanine, a ketone-containing residue, was prepared and PEGylated efficiently via oxime ligation using mPDA. This new catalyst should have a significant impact on the field of bioconjugation, where oxime ligation and hydrazone-oxime exchange are commonly employed.

Indexed as

CatalysisHydrazonesOximesPhenylenediamines3-phenylenediamineHydrazonesOximesPhenylenediamines

Identifiers

PMID23425124
PMCPMC4161282
OpenAlexW2041967216

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.