Evidence map›Paper›PMID 23423655›Full record

ArticleProtein science : a publication of the Protein Society2013

A conserved threonine spring-loads precursor for intein splicing.

Albert K Dearden, Brian Callahan, Patrick Van Roey, Zhong Li, Utsav Kumar, Marlene Belfort, Saroj K Nayak

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Gold Nanoparticles Augment N-Terminal Cleavage and Splicing Reactions inFrontiers in bioengineering and biotechnology · 2021
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. An Atypical Mechanism of Split Intein Molecular Recognition and Folding.Journal of the American Chemical Society · 2018
    Article
  11. Nanobodies: Chemical Functionalization Strategies and Intracellular Applications.Angewandte Chemie (International ed. in English) · 2018
    Review
  12. Design of a Split Intein with Exceptional Protein Splicing Activity.Journal of the American Chemical Society · 2016
    Article
  13. Article
  14. Review
  15. Article
  16. Protein splicing: how inteins escape from precursor proteins.The Journal of biological chemistry · 2014
    Review
  17. Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

Albert K DeardenDepartment of Physics, Applied Physics, and Astronomy, Rensselaer Polytechnic Institute, Troy, New York 12180, USA.
Brian Callahan
Patrick Van Roey
Zhong Li
Utsav Kumar
Marlene Belfort
Saroj K Nayak
Rensselaer Polytechnic Institute · USUniversity at Albany, State University of New York · USAlbany State University · USNew York State Department of Health · USWadsworth Center · US

Funding

SELF-SPLICING INTEINS: FUNCTION, EVOLUTION, APPLICATIONR01GM044844 · NIGMS · WADSWORTH CENTER · PI BELFORT, MARLENE · 1990 to 2019
$8.9M
NIGMS NIH HHS GM44844NIGMS NIH HHS R01 GM044844
6 · The paper itself

Abstract

Protein splicing is an autocatalytic process where an "intein" self-cleaves from a precursor and ligates the flanking N- and C-"extein" polypeptides. Inteins occur in all domains of life and have myriad uses in biotechnology. Although the reaction steps of protein splicing are known, mechanistic details remain incomplete, particularly the initial peptide rearrangement at the N-terminal extein/intein junction. Recently, we proposed that this transformation, an N-S acyl shift, is accelerated by a localized conformational strain, between the intein's catalytic cysteine (Cys1) and the neighboring glycine (Gly-1) in the N-extein. That proposal was based on the crystal structure of a catalytically competent trapped precursor. Here, we define the structural origins and mechanistic relevance of the conformational strain using a combination of quantum mechanical simulations, mutational analysis, and X-ray crystallography. Our results implicate a conserved, but largely unstudied, threonine residue of the Ssp DnaE intein (Thr69) as the mediator of conformational strain through hydrogen bonding. Further, the strain imposed by this residue is shown to position the splice junction in a manner that enhances the rate of the N-S acyl shift substantially. Taken together, our results not only provide fundamental understanding of the control of the first step of protein splicing but also have important implications in various biotechnological applications that require precursor manipulation.

Indexed as

InteinsProtein SplicingCrystallography, X-RayDNA Polymerase IIIEscherichia coliModels, MolecularPoint MutationProtein ConformationDNA Polymerase IIIDNA polymerase III, alpha subunit

Identifiers

PMID23423655
PMCPMC3649257
OpenAlexW2141980936

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.