Evidence map›Paper›PMID 23420846›Full record

ArticleThe Journal of biological chemistry2013

A conserved asparagine in a P-type proton pump is required for efficient gating of protons.

Kira Ekberg, Alex G Wielandt, Morten J Buch-Pedersen, Michael G Palmgren

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Evolutionary and Functional Analysis of aFrontiers in plant science · 2019
    Article
  6. Article
  7. Article
  8. Dynamics of the Plasma Membrane Proton Pump.The Journal of membrane biology · 2015
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Kira EkbergDepartment of Plant and Environmental Sciences, Centre for Membrane Pumps in Cells and Disease-PUMPKIN, Danish National Research Foundation, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg, Denmark.
Alex G WielandtDepartment of Plant and Environmental Sciences, Centre for Membrane Pumps in Cells and Disease-PUMPKIN, Danish National Research Foundation, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg, Denmark.
Morten J Buch-PedersenDepartment of Plant and Environmental Sciences, Centre for Membrane Pumps in Cells and Disease-PUMPKIN, Danish National Research Foundation, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg, Denmark.
Michael G PalmgrenDepartment of Plant and Environmental Sciences, Centre for Membrane Pumps in Cells and Disease-PUMPKIN, Danish National Research Foundation, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg, Denmark. Electronic address: palmgren@life.ku.dk.
University of Copenhagen · DKDanish National Research Foundation · DKNational Research Foundation · ZA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The minimal proton pumping machinery of the Arabidopsis thaliana P-type plasma membrane H(+)-ATPase isoform 2 (AHA2) consists of an aspartate residue serving as key proton donor/acceptor (Asp-684) and an arginine residue controlling the pKa of the aspartate. However, other important aspects of the proton transport mechanism such as gating, and the ability to occlude protons, are still unclear. An asparagine residue (Asn-106) in transmembrane segment 2 of AHA2 is conserved in all P-type plasma membrane H(+)-ATPases. In the crystal structure of the plant plasma membrane H(+)-ATPase, this residue is located in the putative ligand entrance pathway, in close proximity to the central proton donor/acceptor Asp-684. Substitution of Asn-106 resulted in mutant enzymes with significantly reduced ability to transport protons against a membrane potential. Sensitivity toward orthovanadate was increased when Asn-106 was substituted with an aspartate residue, but decreased in mutants with alanine, lysine, glutamine, or threonine replacement of Asn-106. The apparent proton affinity was decreased for all mutants, most likely due to a perturbation of the local environment of Asp-684. Altogether, our results demonstrate that Asn-106 is important for closure of the proton entrance pathway prior to proton translocation across the membrane.

Indexed as

Adenosine TriphosphatasesArabidopsisArabidopsis ProteinsArginineAsparagineBiological TransportCell MembraneCrystallography, X-RayCytosolDNAElectrochemistryGene Expression Regulation, PlantGenetic Complementation TestHydrogen-Ion ConcentrationMembrane PotentialsModels, MolecularAdenosine TriphosphatasesAHA2 protein, ArabidopsisArabidopsis ProteinsArginineAsparagineDNAProton PumpsProtonsProton-Translocating ATPases

Identifiers

PMID23420846
PMCPMC3617265
OpenAlexW2094685001

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.