Evidence map›Paper›PMID 23420843›Full record

ArticleThe Journal of biological chemistry2013

A periodic pattern of evolutionarily conserved basic and acidic residues constitutes the binding interface of actin-tropomyosin.

Bipasha Barua, Patricia M Fagnant, Donald A Winkelmann, Kathleen M Trybus, Sarah E Hitchcock-DeGregori

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 59 citations in OpenAlex.

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  7. Proceedings of the National Academy of Sciences of the United States of America · 2020
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  10. Actin Mutations and Their Role in Disease.International journal of molecular sciences · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Bipasha BaruaDepartment of Neuroscience and Cell Biology, Robert Wood Johnson Medical School, Piscataway, New Jersey 08854; Pathology and Laboratory Medicine, Robert Wood Johnson Medical School, Piscataway, New Jersey 08854. Electronic address: baruabi@umdnj.edu.
Patricia M FagnantDepartment of Molecular Physiology and Biophysics, University of Vermont, Burlington, Vermont 05405.
Donald A WinkelmannPathology and Laboratory Medicine, Robert Wood Johnson Medical School, Piscataway, New Jersey 08854.
Kathleen M TrybusDepartment of Molecular Physiology and Biophysics, University of Vermont, Burlington, Vermont 05405.
Sarah E Hitchcock-DeGregoriDepartment of Neuroscience and Cell Biology, Robert Wood Johnson Medical School, Piscataway, New Jersey 08854; Pathology and Laboratory Medicine, Robert Wood Johnson Medical School, Piscataway, New Jersey 08854.
Johnson University · USUniversity of Vermont · US

Funding

Pathology and Molecular Imaging CoreP01HL110869 · NHLBI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MILEWICZ, DIANNA M · 2012 to 2016
$10.4M
Deciphering how tropomyosin regulates the actin filamentR01GM093065 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI HITCHCOCK-DEGREGORI, SARAH ELLEN · 2010 to 2013
$1.2M
NHLBI NIH HHS HL110869NHLBI NIH HHS P01 HL110869NIGMS NIH HHS GM093065NIGMS NIH HHS R01 GM093065
6 · The paper itself

Abstract

Actin filament cytoskeletal and muscle functions are regulated by actin binding proteins using a variety of mechanisms. A universal actin filament regulator is the protein tropomyosin, which binds end-to-end along the length of the filament. The actin-tropomyosin filament structure is unknown, but there are atomic models in different regulatory states based on electron microscopy reconstructions, computational modeling of actin-tropomyosin, and docking of atomic resolution structures of tropomyosin to actin filament models. Here, we have tested models of the actin-tropomyosin interface in the "closed state" where tropomyosin binds to actin in the absence of myosin or troponin. Using mutagenesis coupled with functional analyses, we determined residues of actin and tropomyosin required for complex formation. The sites of mutations in tropomyosin were based on an evolutionary analysis and revealed a pattern of basic and acidic residues in the first halves of the periodic repeats (periods) in tropomyosin. In periods P1, P4, and P6, basic residues are most important for actin affinity, in contrast to periods P2, P3, P5, and P7, where both basic and acidic residues or predominantly acidic residues contribute to actin affinity. Hydrophobic interactions were found to be relatively less important for actin binding. We mutated actin residues in subdomains 1 and 3 (Asp(25)-Glu(334)-Lys(326)-Lys(328)) that are poised to make electrostatic interactions with the residues in the repeating motif on tropomyosin in the models. Tropomyosin failed to bind mutant actin filaments. Our mutagenesis studies provide the first experimental support for the atomic models of the actin-tropomyosin interface.

Indexed as

ActinsAmino Acid SequenceAnimalsBinding SitesChickensCircular DichroismCytoskeletonEvolution, MolecularHumansInsectaMicroscopy, ElectronMolecular ConformationMolecular Sequence DataMuscle, SmoothMutationProtein BindingActinsTropomyosin

Identifiers

PMID23420843
PMCPMC3617264
OpenAlexW1968952928

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.