Evidence map›Paper›PMID 23418395›Full record

ArticleMolecular & cellular proteomics : MCP2013

Quantitative proteomics demonstrates that the RNA polymerase II subunits Rpb4 and Rpb7 dissociate during transcriptional elongation.

Amber L Mosley, Gerald O Hunter, Mihaela E Sardiu, Michaela Smolle, Jerry L Workman, Laurence Florens, Michael P Washburn

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
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  7. Article
  8. Article
  9. Biogenesis of RNA Polymerases in Yeast.Frontiers in molecular biosciences · 2021
    Review
  10. Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. Review
  16. Different phosphoisoforms of RNA polymerase II engage the Rtt103 termination factor in a structurally analogous manner.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Amber L MosleyDepartment of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, Indiana 46202, USA. almosley@iupui.edu
Gerald O Hunter
Mihaela E Sardiu
Michaela Smolle
Jerry L Workman
Laurence Florens
Michael P Washburn
Stowers Institute for Medical Research · USIndiana University – Purdue University Indianapolis · USIndiana University School of MedicineUniversity of Kansas Medical Center · US

Funding

Regulation of RNA Polymerase II transcription by the phosphatase Rtr1R01GM099714 · NIGMS · INDIANA UNIVERSITY INDIANAPOLIS · PI MOSLEY, AMBER L. · 2012 to 2021
$3.4M
NIGMS NIH HHS R01 GM099714NIGMS NIH HHS R01GM099714
6 · The paper itself

Abstract

Eukaryotic RNA polymerase II (RNAPII) is a 12-subunit enzyme that is responsible for the transcription of messenger RNA. Two of the subunits of RNA polymerase II, Rpb4 and Rpb7, have been shown to dissociate from the enzyme under a number of specific laboratory conditions. However, a biological context for the dissociation of Rpb4 and Rpb7 has not been identified. We have found that Rpb4/7 dissociate from RNAPII upon interaction with specific transcriptional elongation-associated proteins that are recruited to the hyperphosphorylated form of the C-terminal domain. However, the dissociation of Rpb4/7 is likely short lived because a significant level of free Rpb4/7 was not detected by quantitative proteomic analyses. In addition, we have found that RNAPII that is isolated through Rpb7 is depleted in serine 2 C-terminal domain phosphorylation. In contrast to previous reports, these data indicate that Rpb4/7 are dispensable during specific stages of transcriptional elongation in Saccharomyces cerevisiae.

Indexed as

Gene Expression Regulation, FungalTranscription Elongation, GeneticGene Expression ProfilingPhosphorylationProtein Interaction MappingProtein Structure, TertiaryProtein TransportProteomeRNA Polymerase IISaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSerineSignal TransductionProteomeRNA Polymerase IIRPB4 protein, S cerevisiaeRPB7 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSerine

Identifiers

PMID23418395
PMCPMC3675811
OpenAlexW2135969650

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.