Evidence map›Paper›PMID 23417672›Full record

ArticleThe Journal of biological chemistry2013

Characterization and solution structure of the factor VIII C2 domain in a ternary complex with classical and non-classical inhibitor antibodies.

Justin D Walter, Rachel A Werther, Maria S Polozova, Julie Pohlman, John F Healey, Shannon L Meeks, Pete Lollar, P Clint Spiegel

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Blunting specific T-dependent antibody responses with engineered "decoy" B cells.Molecular therapy : the journal of the American Society of Gene Therapy · 2024
    Article
  3. Small-Angle X-Ray Scattering for Macromolecular Complexes.Advances in experimental medicine and biology · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Justin D WalterDepartment of Chemistry, Western Washington University, Bellingham, Washington 98225.
Rachel A WertherDepartment of Chemistry, Western Washington University, Bellingham, Washington 98225.
Maria S PolozovaDepartment of Chemistry, Western Washington University, Bellingham, Washington 98225.
Julie PohlmanDepartment of Chemistry, Western Washington University, Bellingham, Washington 98225.
John F HealeyAflac Cancer and Blood Disorders Center, Department of Pediatrics, Emory University, Atlanta, Georgia 30322.
Shannon L MeeksAflac Cancer and Blood Disorders Center, Department of Pediatrics, Emory University, Atlanta, Georgia 30322.
Pete LollarAflac Cancer and Blood Disorders Center, Department of Pediatrics, Emory University, Atlanta, Georgia 30322.
P Clint SpiegelDepartment of Chemistry, Western Washington University, Bellingham, Washington 98225. Electronic address: spiegep@chem.wwu.edu.
Western Washington University · USAflac (United States) · USCenter for Cancer and Blood Disorders · USEmory University · US

Funding

Translational Research SkillsU54HL112309 · NHLBI · EMORY UNIVERSITY · PI LOLLAR, JOHN S. · 2012 to 2016
$12.1M
STRUCTURE/FUNCTION OF THE FACTOR VIII VWF COMPLEXR01HL040921 · NHLBI · UNIVERSITY OF VERMONT &ST AGRIC COLLEGE · PI LOLLAR, JOHN S. · 1988 to 2010
$2.5M
The Immune Response to Factor VIIIR01HL082609 · NHLBI · EMORY UNIVERSITY · PI LOLLAR, JOHN S. · 2005 to 2010
$2.4M
MINOS (Macromolecular Insights on Nucleic acids Optimized by Scattering)R01GM105404 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI TAINER, JOHN A. · 2012 to 2015
$2.1M
Mechanisms of Immunogenicity of Factor VIIIK08HL102262 · NHLBI · EMORY UNIVERSITY · PI MEEKS, SHANNON L. · 2010 to 2014
$641k
Structure and Stability Studies of Factor VIII to Overcome the Immune ResponseR15HL103518 · NHLBI · WESTERN WASHINGTON UNIVERSITY · PI SPIEGEL, PAUL CLINTON · 2010 to 2010
$389k
NHLBI NIH HHS K08 HL102262NHLBI NIH HHS R01 HL040921NHLBI NIH HHS R01 HL082609NHLBI NIH HHS R15 HL103518NHLBI NIH HHS U54 HL112309NIGMS NIH HHS R01 GM105404
6 · The paper itself

Abstract

The most significant complication for patients with severe cases of congenital or acquired hemophilia A is the development of inhibitor antibodies against coagulation factor VIII (fVIII). The C2 domain of fVIII is a significant antigenic target of anti-fVIII antibodies. Here, we have utilized small angle x-ray scattering (SAXS) and biochemical techniques to characterize interactions between two different classes of anti-C2 domain inhibitor antibodies and the isolated C2 domain. Multiple assays indicated that antibodies 3E6 and G99 bind independently to the fVIII C2 domain and can form a stable ternary complex. SAXS-derived numerical estimates of dimensional parameters for all studied complexes agree with the proportions of the constituent proteins. Ab initio modeling of the SAXS data results in a long kinked structure of the ternary complex, showing an angle centered at the C2 domain of ∼130°. Guided by biochemical data, rigid body modeling of subunits into the molecular envelope of the ternary complex suggests that antibody 3E6 recognizes a C2 domain epitope consisting of the Arg(2209)-Ser(2216) and Leu(2178)-Asp(2187) loops. In contrast, antibody G99 recognizes the C2 domain primarily through the Pro(2221)-Trp(2229) loop. These two epitopes are on opposing sides of the fVIII C2 domain, are consistent with the solvent accessibility in the context of the entire fVIII molecule, and provide further structural detail regarding the pathogenic immune response to fVIII.

Indexed as

Blood Coagulation FactorsChromatographyEnzyme-Linked Immunosorbent AssayEpitopesFactor VIIIHemophilia AHumansImmunoglobulin Fab FragmentsMutationProtein BindingProtein ConformationProtein Structure, TertiaryScattering, Small AngleSolventsBlood Coagulation FactorsEpitopesFactor VIIIImmunoglobulin Fab FragmentsSolvents

Identifiers

PMID23417672
PMCPMC3617290
OpenAlexW2093845272

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.