Evidence map›Paper›PMID 23417562›Full record

ArticleEukaryotic cell2013

Transcriptome profiling of Botrytis cinerea conidial germination reveals upregulation of infection-related genes during the prepenetration stage.

Michaela Leroch, Astrid Kleber, Evelyn Silva, Tina Coenen, Dieter Koppenhöfer, Amir Shmaryahu, Pablo D T Valenzuela, Matthias Hahn

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
6.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 94 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Lipids and Lipid-Mediated Signaling in Plant-Pathogen Interactions.International journal of molecular sciences · 2024
    Review
  6. Article
  7. Knockdown ofInternational journal of molecular sciences · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Nitric Oxide Metabolism Affects Germination inJournal of fungi (Basel, Switzerland) · 2022
    Article
  12. Transcriptional Network inJournal of fungi (Basel, Switzerland) · 2022
    Article
  13. The Multifaceted Roles of Fungal Cutinases during Infection.Journal of fungi (Basel, Switzerland) · 2022
    Review
  14. Article
  15. Article
  16. Article
  17. Silencing of the Slt2-Type MAP KinaseInternational journal of molecular sciences · 2021
    Article
  18. Frontiers in plant science · 2021
    Article
  19. Journal of fungi (Basel, Switzerland) · 2020
    Article
  20. The Destructive Fungal PathogenPathogens (Basel, Switzerland) · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Michaela LerochDepartment of Biology, University of Kaiserslautern, Kaiserslautern, Germany.
Astrid Kleber
Evelyn Silva
Tina Coenen
Dieter Koppenhöfer
Amir Shmaryahu
Pablo D T Valenzuela
Matthias Hahn
University of Kaiserslautern · DEFundación Ciencia and Vida · CLUniversidad Andrés Bello · CL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Botrytis cinerea causes gray mold on a great number of host plants. Infection is initiated by airborne conidia that invade the host tissue, often by penetration of intact epidermal cells. To mimic the surface properties of natural plant surfaces, conidia were incubated on apple wax-coated surfaces, resulting in rapid germination and appressorium formation. Global changes in gene expression were analyzed by microarray hybridization between conidia incubated for 0 h (dormant), 1 h (pregermination), 2.5 h (postgermination), 4 h (appressoria), and 15 h (early mycelium). Considerable changes were observed, in particular between 0 h and 1 h. Genes induced during germination were enriched in those genes encoding secreted proteins, including lytic enzymes. Comparison of wild-type and a nonpathogenic MAP kinase mutant (bmp1) revealed marked differences in germination-related gene expression, in particular related to secretory proteins. Using promoter-GFP reporter strains, we detected a strictly germination-specific expression pattern of a putative chitin deacetylase gene (cda1). In contrast, a cutinase gene (cutB) was found to be expressed only in the presence of plant lipids, in a developmentally less stringent pattern. We also identified a coregulated gene cluster possibly involved in secondary metabolite synthesis which was found to be controlled by a transcription factor also encoded in this cluster. Our data demonstrate that early conidial development in B. cinerea is accompanied by rapid shifts in gene expression that prepare the fungus for germ tube outgrowth and host cell invasion.

Indexed as

Gene Expression Regulation, FungalAmidohydrolasesBotrytisCarboxylic Ester HydrolasesFungal ProteinsGene Expression ProfilingGenes, ReporterGreen Fluorescent ProteinsModels, BiologicalPlant DiseasesPlantsSpores, FungalTranscription FactorsWaxesAmidohydrolasesCarboxylic Ester Hydrolaseschitin deacetylasecutinaseFungal ProteinsGreen Fluorescent ProteinsTranscription FactorsWaxes

Identifiers

PMID23417562
PMCPMC3623440
OpenAlexW1995161195

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.