Evidence map›Paper›PMID 23417560›Full record

ArticleEukaryotic cell2013

Nucleosome assembly factors CAF-1 and HIR modulate epigenetic switching frequencies in an H3K56 acetylation-associated manner in Candida albicans.

John S Stevenson, Haoping Liu

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. White-opaque switching inMicrobiology and molecular biology reviews : MMBR · 2024
    Review
  3. Article
  4. Effects of Hst3p inhibition inFrontiers in cellular and infection microbiology · 2022
    Article
  5. Article
  6. The Roles of Chromatin Accessibility in Regulating theJournal of fungi (Basel, Switzerland) · 2021
    Review
  7. Article
  8. Article
  9. Metabonomics onEmerging microbes & infections · 2019
    Article
  10. Article
  11. Article
  12. Epigenetic control of pheromone MAPK signaling determines sexual fecundity inProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

John S StevensonDepartment of Biological Chemistry, University of California, Irvine, California, USA.
Haoping Liu
University of California, Irvine · US

Funding

REGULATION OF FILAMENTOUS GROWTH IN YEASTR01GM055155 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI LIU, HAOPING · 1997 to 2013
$4.1M
Dissecting triazole resistance and transcriptional regulation of ergosterol homeoR01AI099190 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI LIU, HAOPING · 2012 to 2016
$3.1M
NIAID NIH HHS R01 AI099190NIAID NIH HHS R01AI099190-01NIAID NIH HHS R01GM/AI55155-14ANIGMS NIH HHS R01 GM055155
6 · The paper itself

Abstract

CAF-1 and HIR are highly conserved histone chaperone protein complexes that function in the assembly of nucleosomes onto chromatin. CAF-1 is characterized as having replication-coupled nucleosome activity, whereas the HIR complex can assemble nucleosomes independent of replication. Histone H3K56 acetylation, controlled by the acetyltransferase Rtt109 and deacetylase Hst3, also plays a significant role in nucleosome assembly. In this study, we generated a set of deletion mutants to genetically characterize pathway-specific and overlapping functions of CAF-1 and HIR in C. albicans. Their roles in epigenetic maintenance of cell type were examined by using the white-opaque switching system in C. albicans. We show that CAF-1 and HIR play conserved roles in UV radiation recovery, repression of histone gene expression, correct chromosome segregation, and stress responses. Unique to C. albicans, the cac2Δ/Δ mutant shows increased sensitivity to the Hst3 inhibitor nicotinamide, while the rtt109Δ/Δ cac2Δ/Δ and hir1Δ/Δ cac2Δ/Δ mutants are resistant to nicotinamide. CAF-1 plays a major role in maintaining cell types, as the cac2Δ/Δ mutant exhibited increased switching frequencies in both directions and switched at a high frequency to opaque in response to nicotinamide. Like the rtt109Δ/Δ mutant, the hir1Δ/Δ cac2Δ/Δ double mutant is defective in maintaining the opaque cell fate and blocks nicotinamide-induced opaque formation, and the defects are suppressed by ectopic expression of the master white-opaque regulator Wor1. Our data suggest an overlapping function of CAF-1 and HIR in epigenetic regulation of cell fate determination in an H3K56 acetylation-associated manner.

Indexed as

Chromatin Assembly and DisassemblyAcetylationAcetyltransferasesCandida albicansChromatin Assembly Factor-1Epigenesis, GeneticFungal ProteinsGene Expression Regulation, FungalHistone DeacetylasesHistonesMutationNiacinamideNucleosomesRepressor ProteinsTranscription FactorsAcetyltransferasesChromatin Assembly Factor-1Fungal ProteinsHistone DeacetylasesHistonesNiacinamideNucleosomesRepressor ProteinsTranscription Factors

Identifiers

PMID23417560
PMCPMC3623449
OpenAlexW2005265326

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.