Evidence map›Paper›PMID 23417323›Full record

ArticleImmunogenetics2013

Peptide-binding motifs associated with MHC molecules common in Chinese rhesus macaques are analogous to those of human HLA supertypes and include HLA-B27-like alleles.

Bianca R Mothé, Scott Southwood, John Sidney, A Michelle English, Amanda Wriston, Ilka Hoof, Jeffrey Shabanowitz, Donald F Hunt, Alessandro Sette

Abstract readComparative Study
In one paragraph

Article in Immunogenetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
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  4. Review
  5. The HLA A03 Supertype and SeveralJournal of virology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Bianca R MothéDepartment of Vaccine Discovery, La Jolla Institute for Allergy and Immunology, La Jolla, CA 92037, USA. bmothe@csusm.edu
Scott Southwood
John Sidney
A Michelle English
Amanda Wriston
Ilka Hoof
Jeffrey Shabanowitz
Donald F Hunt
Alessandro Sette
University of Virginia · USLa Jolla Institute for Immunology · USCalifornia State University, San Marcos · USTechnical University of Denmark · DK

Funding

Tulane NPRC SPF Sheltered Outdoor Enclosure ExpansionP51OD011104 · OD · TULANE UNIVERSITY OF LOUISIANA · PI L Lee HAMM · 2012 to 2026
$142.4M
ZCM:A NOVEL BROAD-SPECTRUM MICROBICIDE FOR SEXUALLY TRANSMITTED INFECTIONSP51RR000164 · NCRR · TULANE UNIVERSITY OF LOUISIANA · PI VEAZEY, RONALD S. · 1985 to 2011
$100.1M
PROCESSED ANTIGEN CHARACTERIZATION BY MASS SPECTROMETRYR01AI033993 · NIAID · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI HUNT, DONALD F · 1994 to 2017
$4.9M
The Immunogenetics of Macaques Used in Biodefense ResearchR01AI070902 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI SETTE, ALESSANDRO · 2008 to 2011
$1.6M
MHC characterization in Chinese rhesus macaquesR15AI064175 · NIAID · CALIFORNIA STATE UNIVERSITY SAN MARCOS · PI MOTHE, BIANCA ROMINA · 2005 to 2013
$789k
NCRR NIH HHS P51 RR000164NCRR NIH HHS P51 RR00164-50NIAID NIH HHS R01 AI033993NIAID NIH HHS R01 AI070902NIAID NIH HHS R01 AI070902-01A2NIAID NIH HHS R15 AI064175NIAID NIH HHS R15 AI064175-01NIH HHS P51 OD011104
6 · The paper itself

Abstract

Chinese rhesus macaques are of particular interest in simian immunodeficiency virus/human immunodeficiency virus (SIV/HIV) research as these animals have prolonged kinetics of disease progression to acquired immunodeficiency syndrome (AIDS), compared to their Indian counterparts, suggesting that they may be a better model for HIV. Nevertheless, the specific mechanism(s) accounting for these kinetics remains unclear. The study of major histocompatibility complex (MHC) molecules, including their MHC/peptide-binding motifs, provides valuable information for measuring cellular immune responses and deciphering outcomes of infection and vaccine efficacy. In this study, we have provided detailed characterization of six prevalent Chinese rhesus macaque MHC class I alleles, yielding a combined phenotypic frequency of 29 %. The peptide-binding specificity of two of these alleles, Mamu-A2*01:02 and Mamu-B*010:01, as well as the previously characterized allele Mamu-B*003:01 (and Indian rhesus Mamu-B*003:01), was found to be analogous to that of alleles in the HLA-B27 supertype family. Specific alleles in the HLA-B27 supertype family, including HLA-B*27:05, have been associated with long-term nonprogression to AIDS in humans. All six alleles characterized in the present study were found to have specificities analogous to HLA supertype alleles. These data contribute to the concept that Chinese rhesus macaque MHC immunogenetics is more similar to HLA than their Indian rhesus macaque counterparts and thereby warrants further studies to decipher the role of these alleles in the context of SIV infection.

Indexed as

Amino Acid MotifsAllelesAnimalsHLA AntigensHLA-B27 AntigenHumansMacaca mulattaPeptide FragmentsPeptide LibraryProtein BindingSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationHLA AntigensHLA-B27 AntigenPeptide FragmentsPeptide Library

Identifiers

PMID23417323
PMCPMC3633659
OpenAlexW2082878959

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.