ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2013
QTL mapping and confirmation for tolerance of anaerobic conditions during germination derived from the rice landrace Ma-Zhan Red.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers, 1 of them a synthesis that pooled it.
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Who cites it
62 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Integrated meta-analysis and transcriptomics pinpoint genomic loci and novel candidate genes associated with submergence tolerance in rice.BMC genomics · 2024Pooled it
- Article
- Enhancing crop resilience through elite pre-breeding lines with key traits for dry direct-seeded rice.The plant genome · 2025Article
- Identification of submergence tolerance QTLs/genes during seed germination in 432 rice varieties by GWAS.BMC plant biology · 2025Article
- GWAS and haplotype analysis reveal the intricate interplay of hormones in rice seed germination under hypoxic conditions.3 Biotech · 2025Article
- Identification of Candidate Genes for Hypoxia Tolerance in Rice by Genome-Wide Association Analysis and Transcriptome Sequencing.Rice (New York, N.Y.) · 2025Article
- Identification of Submergence Tolerance Loci in Dongxiang Wild Rice (DXWR) by Genetic Linkage and Transcriptome Analyses.International journal of molecular sciences · 2025Article
- Genome-wide association study to identify candidate genes for submergence tolerance during rice seed germination.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Understanding anaerobic germination in direct-seeded rice: a genomic mapping approach.BMC plant biology · 2024Article
- Genome wide association study and transcriptome analysis identify candidate genes regulating wheat coleoptile length.Molecular breeding : new strategies in plant improvement · 2024Article
- Identification of Key Genes and Pathways for Anaerobic Germination Tolerance in Rice Using Weighted Gene Co-Expression Network Analysis (WGCNA) in Association with Quantitative Trait Locus (QTL) Mapping.Rice (New York, N.Y.) · 2024Article
- Genetic factors underlying anaerobic germination in rice: Genome-wide association study and transcriptomic analysis.The plant genome · 2024Article
- Identification and Regulation of Hypoxia-Tolerant and Germination-Related Genes in Rice.International journal of molecular sciences · 2024Review
- GWAS Combined with WGCNA of Transcriptome and Metabolome to Excavate Key Candidate Genes for Rice Anaerobic Germination.Rice (New York, N.Y.) · 2023Article
- UDP-glucosyltransferase OsUGT75A promotes submergence tolerance during rice seed germination.Nature communications · 2023Article
- Comparative transcriptomic analysis of germinating rice seedlings to individual and combined anaerobic and cold stress.BMC genomics · 2023Article
- The Impact of Carbohydrate Management on Coleoptile Elongation in Anaerobically Germinating Seeds of Rice (Plants (Basel, Switzerland) · 2023Article
- Flooding tolerance in Rice: adaptive mechanism and marker-assisted selection breeding approaches.Molecular biology reports · 2023Review
- Genome-wide association study reveals novel genetic loci involved in anaerobic germination tolerance inMolecular breeding : new strategies in plant improvement · 2023Article
- Screening of potential donors for anaerobic stress tolerance during germination in rice.Frontiers in plant science · 2023Article
2 more citing papers are in PubMed but not listed here.
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6 authors.
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Abstract
Wide adoption of direct-seeded rice practices has been hindered by poorly leveled fields, heavy rainfall and poor drainage, which cause accumulation of water in the fields shortly after sowing, leading to poor crop establishment. This is due to the inability of most rice varieties to germinate and reach the water surface under complete submergence. Hence, tolerance of anaerobic conditions during germination is an essential trait for direct-seeded rice cultivation in both rainfed and irrigated ecosystems. A QTL study was conducted to unravel the genetic basis of tolerance of anaerobic conditions during germination using a population derived from a cross between IR42, a susceptible variety, and Ma-Zhan Red, a tolerant landrace from China. Phenotypic data was collected based on the survival rates of the seedlings at 21 days after sowing of dry seeds under 10 cm of water. QTL analysis of the mapping population consisting of 175 F2:3 families genotyped with 118 SSR markers identified six significant QTLs on chromosomes 2, 5, 6, and 7, and in all cases the tolerant alleles were contributed by Ma-Zhan Red. The largest QTL on chromosome 7, having a LOD score of 14.5 and an R (2) of 31.7 %, was confirmed using a BC2F3 population. The QTLs detected in this study provide promising targets for further genetic characterization and for use in marker-assisted selection to rapidly develop varieties with improved tolerance to anaerobic condition during germination. Ultimately, this trait can be combined with other abiotic stress tolerance QTLs to provide resilient varieties for direct-seeded systems.
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