Evidence map›Paper›PMID 23416557›Full record

ArticleJournal of molecular biology2013

Structure of the disulfide bond generating membrane protein DsbB in the lipid bilayer.

Ming Tang, Anna E Nesbitt, Lindsay J Sperling, Deborah A Berthold, Charles D Schwieters, Robert B Gennis, Chad M Rienstra

Abstract read
In one paragraph

Article in Journal of molecular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Solid-State NMRJournal of magnetic resonance (San Diego, Calif. : 1997) · 2024
    Article
  2. Distinct enzymatic strategies forCritical reviews in biochemistry and molecular biology · 2023
    Article
  3. The Lipid Activation Mechanism of a Transmembrane Potassium Channel.Journal of the American Chemical Society · 2020
    Article
  4. Conformational changes upon gating of KirBac1.1 into an open-activated state revealed by solid-state NMR and functional assays.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  5. Review
  6. New applications of solid-state NMR in structural biology.Emerging topics in life sciences · 2018
    Article
  7. Article
  8. Solid-State NMR H-N-(C)-H and H-N-C-C 3D/4D Correlation Experiments for Resonance Assignment of Large Proteins.Chemphyschem : a European journal of chemical physics and physical chemistry · 2017
    Article
  9. Applications of NMR to membrane proteins.Archives of biochemistry and biophysics · 2017
    Review
  10. Article
  11. Review
  12. Membrane proteins in their native habitat as seen by solid-state NMR spectroscopy.Protein science : a publication of the Protein Society · 2015
    Review
  13. The NMR-Rosetta capsid model of M13 bacteriophage reveals a quadrupled hydrophobic packing epitope.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Assignment of oriented sample NMR resonances from a three transmembrane helix protein.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ming TangDepartment of Chemistry, University of Illinois at Urbana-Champaign, 600 South Mathews Avenue, Urbana, IL 61801, USA.
Anna E Nesbitt
Lindsay J Sperling
Deborah A Berthold
Charles D Schwieters
Robert B Gennis
Chad M Rienstra

Funding

Biomedical ImagingZIACT000090 · CIT · CENTER FOR INFORMATION TECHNOLOGY · PI TRUS, BENES L · 2009 to 2018
$7.8M
INSTITUTIONAL NRSA IN MOLECULAR BIOPHYSICST32GM008276 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI GROSMAN, CLAUDIO F · 1988 to 2013
$4.8M
Structure and Function of Protein-Membrane Interactions in Blood ClottingR01HL103999 · NHLBI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI MORRISSEY, JAMES H., RIENSTRA, CHAD M · 2010 to 2014
$2.8M
Structures of Protein Aggregates by Solid-State NMRR01GM073770 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI RIENSTRA, CHAD M · 2007 to 2014
$2.6M
High-Field, Wide-Bore Solid-State NMR Spectrometer for Membrane Protein StructureS10RR025037 · NCRR · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI RIENSTRA, CHAD M · 2008 to 2008
$1.9M
Structure and Function of Membrane Protein Complexes(RMI)R01GM075937 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI RIENSTRA, CHAD M · 2005 to 2009
$1.4M
Mouse Models of Functional Insertion PolymorphismsR01GM103999 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI BURNS, KATHLEEN H · 2013 to 2016
$1.2M
Integrated Theoretical and NMR Studies of PTEN-lipid InteractionsF32GM095344 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI NESBITT, ANNA ELIZABETH · 2010 to 2011
$70k
Intramural NIH HHSNCRR NIH HHS S10 RR025037NCRR NIH HHS S10RR025037NHLBI NIH HHS R01 HL103999NHLBI NIH HHS R01HL103999NIGMS NIH HHS 5 T32 GM008276NIGMS NIH HHS F32 GM095344NIGMS NIH HHS F32GM095344NIGMS NIH HHS R01 GM073770NIGMS NIH HHS R01GM073770NIGMS NIH HHS R01 GM075937NIGMS NIH HHS R01GM075937NIGMS NIH HHS R01 GM103999NIGMS NIH HHS T32 GM008276
6 · The paper itself

Abstract

The integral membrane protein DsbB in Escherichia coli is responsible for oxidizing the periplasmic protein DsbA, which forms disulfide bonds in substrate proteins. We have developed a high-resolution structural model by combining experimental X-ray and solid-state NMR with molecular dynamics (MD) simulations. We embedded the high-resolution DsbB structure, derived from the joint calculation with X-ray reflections and solid-state NMR restraints, into the lipid bilayer and performed MD simulations to provide a mechanistic view of DsbB function in the membrane. Further, we revealed the membrane topology of DsbB by selective proton spin diffusion experiments, which directly probe the correlations of DsbB with water and lipid acyl chains. NMR data also support the model of a flexible periplasmic loop and an interhelical hydrogen bond between Glu26 and Tyr153.

Indexed as

Amino Acid SequenceBacterial ProteinsCrystallography, X-RayDisulfidesEscherichia coli ProteinsHydrogen BondingLipid BilayersMembrane ProteinsModels, MolecularMolecular Dynamics SimulationMolecular Sequence DataNuclear Magnetic Resonance, BiomolecularSubstrate SpecificityBacterial ProteinsDisulfidesDsbB protein, BacteriaEscherichia coli ProteinsLipid BilayersMembrane Proteins

Identifiers

PMID23416557
PMCPMC3670690

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.