Evidence map›Paper›PMID 23414755›Full record

ArticleCell host & microbe2013

Xanthomonas type III effector XopD desumoylates tomato transcription factor SlERF4 to suppress ethylene responses and promote pathogen growth.

Jung-Gun Kim, William Stork, Mary Beth Mudgett

Open access · bronzeAbstract read
In one paragraph

Article in Cell host & microbe, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed, 1 pooled it
21.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 1 synthesis or guideline pooled it, 198 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Article
  5. Review
  6. The Candidate Effector Cgmas2 Orchestrates Biphasic Infection ofInternational journal of molecular sciences · 2026
    Article
  7. Article
  8. Review
  9. Review
  10. Review
  11. Article
  12. Article
  13. Review
  14. Review
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  16. Article
  17. Article
  18. International journal of molecular sciences · 2022
    Article
  19. Plant susceptible responses: the underestimated side of plant-pathogen interactions.Biological reviews of the Cambridge Philosophical Society · 2022
    Review
  20. Article

28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Jung-Gun KimDepartment of Biology, Stanford University, Stanford, CA 94305-5020, USA.
William Stork
Mary Beth Mudgett
Stanford University · US

Funding

Supplement to Enhance Wellness and Resiliency in the Graduate EnvironmentT32GM007276 · NIGMS · STANFORD UNIVERSITY · PI MORRISON, ASHBY J. · 1985 to 2023
$32.9M
Dissection of AvrBsT-BST defense pathway in ArabidopsisR01GM068886 · NIGMS · STANFORD UNIVERSITY · PI MUDGETT, MARY BETH · 2004 to 2013
$2.6M
NIGMS NIH HHS 2 R01 GM068886-06A1NIGMS NIH HHS R01 GM068886NIGMS NIH HHS T32 GM007276
6 · The paper itself

Abstract

XopD, a type III secretion effector from Xanthomonas euvesicatoria (Xcv), the causal agent of bacterial spot of tomato, is required for pathogen growth and delay of host symptom development. XopD carries a C-terminal SUMO protease domain, a host range determining nonspecific DNA-binding domain and two EAR motifs typically found in repressors of stress-induced transcription. The precise target(s) and mechanism(s) of XopD are obscure. We report that XopD directly targets the tomato ethylene responsive transcription factor SlERF4 to suppress ethylene production, which is required for anti-Xcv immunity and symptom development. SlERF4 expression was required for Xcv ΔxopD-induced ethylene production and ethylene-stimulated immunity. XopD colocalized with SlERF4 in subnuclear foci and catalyzed SUMO1 hydrolysis from lysine 53 of SlERF4, causing SlERF4 destabilization. Mutation of lysine 53 prevented SlERF4 sumoylation, decreased SlERF4 levels, and reduced SlERF4 transcription. These data suggest that XopD desumoylates SlERF4 to repress ethylene-induced transcription required for anti-Xcv immunity.

Indexed as

Bacterial ProteinsBacterial Secretion SystemsDisease SusceptibilityEthylenesGenes, PlantHost-Pathogen InteractionsLyasesPlant DiseasesPlant LeavesPlant ProteinsProteasome Endopeptidase ComplexProtein Interaction MappingProtein StabilityRNA, MessengerSolanum lycopersicumSumoylation1-aminocyclopropanecarboxylate synthaseATP dependent 26S proteaseBacterial ProteinsBacterial Secretion SystemsethyleneEthylenesLyasesPlant ProteinsProteasome Endopeptidase ComplexRNA, MessengerTranscription Factors

Identifiers

PMID23414755
PMCPMC3622456
OpenAlexW2092236261

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.