Evidence map›Paper›PMID 23412869›Full record

ArticleDrug metabolism and drug interactions2013

Regulatory polymorphisms in CYP2C19 affecting hepatic expression.

Jonathan C Sanford, Yingying Guo, Wolfgang Sadee, Danxin Wang

Open access · greenAbstract read
In one paragraph

Article in Drug metabolism and drug interactions, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
  2. Article
  3. CYP2C19 gene polymorphism in Ningxia.Pharmacological reports : PR · 2023
    Article
  4. Article
  5. Sources of Interindividual Variability.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  6. Article
  7. Review
  8. Impact of cytochrome P450 variation on meperidineXenobiotica; the fate of foreign compounds in biological systems · 2020
    Article
  9. Development and validation of T-ARMS-PCR to detect CYP2C19*17 allele.Journal of clinical laboratory analysis · 2020
    Article
  10. Article
  11. Cytochrome P450: Polymorphisms and Roles in Cancer, Diabetes and AtherosclerosisAsian Pacific journal of cancer prevention : APJCP · 2018
    Review
  12. Review
  13. Article
  14. Article
  15. The effect of polymorphic metabolism enzymes on serum phenytoin level.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2015
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Jonathan C Sanford
Yingying Guo
Wolfgang Sadee
Danxin Wang
The Ohio State University · USEli Lilly (United States) · US

Funding

Expression Genetics in Drug TherapyU01GM092655 · NIGMS · OHIO STATE UNIVERSITY · PI SADEE, WOLFGANG · 2010 to 2014
$8.6M
NIGMS NIH HHS U01 GM092655NIGMS NIH HHS U01 GM92655
6 · The paper itself

Abstract

backgroundCytochrome P450 2C19 is responsible for the metabolism of many drugs, including the activation of clopidogrel. The allele CYP2C19*17 is associated with ultra-rapid metabolizer phenotypes by increasing gene transcription. This study tests to what extent CYP2C19*17 enhances CYP2C19 expression in human liver and whether additional regulatory variants contribute to variation in CYP2C19 expression.

methodsCYP2C19 mRNA was measured with quantitative real-time PCR (qRT-PCR), enzyme activity as metabolic velocity with S-mephenytoin as the substrate and allelic mRNA expression ratio with SNaPshot in human livers. CYP2C19 transcribed exons and a 4kb promoter region were sequenced using IonTorrent PGM or Sanger sequencing and screened for polymorphisms associated with total hepatic CYP2C19 mRNA, enzyme activity and allelic mRNA ratios.

resultsLivers heterozygote and homozygous for CYP2C19*17 had mRNA levels 1.8-fold (p=0.028) and 2.9-fold (p=0.006), respectively, above homozygous reference allele livers. CYP2C19*17 heterozygotes were also associated with increased allelic mRNA expression (allelic ratio ~1.8-fold, SD±0.6, p<0.005), whereas CYP2C19 enzyme activity was elevated 2.3-fold, with borderline significance (p=0.06) in CYP2C19*17 carriers. One liver sample of African ancestry displayed a 2-fold allelic expression ratio, and another sample, a ~12-fold increase in metabolic velocity. Neither case was accounted for by *17, which indicates the presence of additional regulatory variants.

conclusionsOur findings confirm *17 as a regulatory polymorphism enhancing hepatic CYP2C19 expression 2-fold with potential to compensate for the loss of function allele CYP2C19*2. Additional regulatory factors may also enhance CYP2C19 expression in African American populations.

Indexed as

Gene Expression Regulation, EnzymologicAllelesAryl Hydrocarbon HydroxylasesBlack or African AmericanCytochrome P-450 CYP2C19Genetic VariationHumansLiverPolymorphism, Single NucleotideReal-Time Polymerase Chain ReactionRNA, MessengerAryl Hydrocarbon HydroxylasesCYP2C19 protein, humanCytochrome P-450 CYP2C19RNA, Messenger

Identifiers

PMID23412869
PMCPMC3755489
OpenAlexW2058024738

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.