ArticleGenetics and molecular biology2012
Methods for detection of horizontal transfer of transposable elements in complete genomes.
Article in Genetics and molecular biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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Who cites it
10 citing papers in PubMed.
- Evolutionary Study of Transposable Elements: Structural Characterization and Phylogenomic Profiling in Plant Genomes.Journal of molecular evolution · 2026Review
- Current state and future prospects of Horizontal Gene Transfer detection.NAR genomics and bioinformatics · 2025Review
- hgtseq: A Standard Pipeline to Study Horizontal Gene Transfer.International journal of molecular sciences · 2022Article
- Orthology-Based Estimate of the Contribution of Horizontal Gene Transfer from Distantly Related Bacteria to the Intraspecific Diversity and Differentiation ofPathogens (Basel, Switzerland) · 2021Article
- Comparative Analysis of the Secretome and Interactome ofFrontiers in immunology · 2020Article
- An antifungal polyketide associated with horizontally acquired genes supports symbiont-mediated defense in Lagria villosa beetles.Nature communications · 2018Article
- Genetic exchange in eukaryotes through horizontal transfer: connected by the mobilome.Mobile DNA · 2018Review
- Molecular and functional evolution of the fungal diterpene synthase genes.BMC microbiology · 2015Article
- Large distribution and high sequence identity of a Copia-type retrotransposon in angiosperm families.Plant molecular biology · 2015Article
- A new genome-wide method to track horizontally transferred sequences: application to Drosophila.Genome biology and evolution · 2014Article
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Authors and funding
2 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Recent advances in nucleic acid sequencing technology are creating a diverse landscape for the analysis of horizontal transfer in complete genomes. Previously limited to prokaryotes, the availability of complete genomes from close eukaryotic species presents an opportunity to validate hypotheses about the patterns of evolution and mechanisms that drive horizontal transfer. Many of those methods can be transported from methods previously used in prokaryotic genomes, as the assumptions for horizontal transfer can be interpreted as the same. Some methods, however, require a complete adaptation, while others need refinements in sensitivity and specificity to deal with the huge datasets generated from next-generation sequencing technologies. Here we list the types of methods used for horizontal transfer detection, as well as theirs strengths and weakness.
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