ArticlePloS one2013
Comparative genomics of 12 strains of Erwinia amylovora identifies a pan-genome with a large conserved core.
Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.
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Who cites it
48 citing papers in PubMed.
- Enzymatic Biocontrol of Fire Blight (Environmental science & technology · 2026Article
- Screening and genomic identification of the bacterial pathogens from an apple orchard in Kazakhstan.PeerJ · 2026Article
- Development of strain specific simple sequence repeats and assessment of genetic diversity in Erwinia amylovora from marker selection to phylogenetic analysis.Scientific reports · 2025Article
- Comparative genomics-based insights intoApplied and environmental microbiology · 2025Article
- Genetic Diversity and Genotype Distribution of Erwinia amylovora in Korea.The plant pathology journal · 2025Article
- Intraspecific diversity of Erwinia amylovora strains from northern Algeria.BMC microbiology · 2024Article
- Investigating the impact of insertion sequences and transposons in the genomes of the most significant phytopathogenic bacteria.Microbial genomics · 2024Article
- High genetic diversity and different type VI secretion systems in Enterobacter species revealed by comparative genomics analysis.BMC microbiology · 2024Article
- Epidemiological description of fire blight introduction patterns to Central Asia and the Caucasus region based on CRISPR spacer typing and genome analysis.Phytopathology research · 2024Article
- Novel approach toward the understanding of genetic diversity based on the two types of amino acid repeats in Erwinia amylovora.Scientific reports · 2023Article
- Genome sequencing provides new insights on the distribution of Erwinia amylovora lineages in northern Italy.Environmental microbiology reports · 2022Article
- Variability within a clonal population ofPeerJ · 2022Article
- CRISPR genotyping as complementary tool for epidemiological surveillance of Erwinia amylovora outbreaks.PloS one · 2021Article
- Article
- Comparative Genome Analysis Reveals Natural Variations in the Genomes ofThe plant pathology journal · 2020Article
- Inhibition of Erwinia amylovora by Bacillus nakamurai.Current microbiology · 2020Article
- Distinct patterns of natural selection determine sub-population structure in the fire blight pathogen, Erwinia amylovora.Scientific reports · 2019Article
- Chromosomally EncodedApplied and environmental microbiology · 2019Article
- A genome-wide analysis of desferrioxamine mediated iron uptake in Erwinia spp. reveals genes exclusive of the Rosaceae infecting strains.Scientific reports · 2019Article
- Recombination of ecologically and evolutionarily significant loci maintains genetic cohesion in the Pseudomonas syringae species complex.Genome biology · 2019Article
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Authors and funding
11 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The plant pathogen Erwinia amylovora can be divided into two host-specific groupings; strains infecting a broad range of hosts within the Rosaceae subfamily Spiraeoideae (e.g., Malus, Pyrus, Crataegus, Sorbus) and strains infecting Rubus (raspberries and blackberries). Comparative genomic analysis of 12 strains representing distinct populations (e.g., geographic, temporal, host origin) of E. amylovora was used to describe the pan-genome of this major pathogen. The pan-genome contains 5751 coding sequences and is highly conserved relative to other phytopathogenic bacteria comprising on average 89% conserved, core genes. The chromosomes of Spiraeoideae-infecting strains were highly homogeneous, while greater genetic diversity was observed between Spiraeoideae- and Rubus-infecting strains (and among individual Rubus-infecting strains), the majority of which was attributed to variable genomic islands. Based on genomic distance scores and phylogenetic analysis, the Rubus-infecting strain ATCC BAA-2158 was genetically more closely related to the Spiraeoideae-infecting strains of E. amylovora than it was to the other Rubus-infecting strains. Analysis of the accessory genomes of Spiraeoideae- and Rubus-infecting strains has identified putative host-specific determinants including variation in the effector protein HopX1(Ea) and a putative secondary metabolite pathway only present in Rubus-infecting strains.
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