Evidence map›Paper›PMID 23408630›Full record

ArticleJournal of virology2013

Multiple independent emergences of type 2 vaccine-derived polioviruses during a large outbreak in northern Nigeria.

Cara C Burns, Jing Shaw, Jaume Jorba, David Bukbuk, Festus Adu, Nicksy Gumede, Muhammed Ali Pate, Emmanuel Ade Abanida, Alex Gasasira, Jane Iber and 18 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed
13.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed, 156 citations in OpenAlex.

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  14. Novel Network Method Major Minor Variation Clustering Enables Identification of Poliovirus Clusters with High-Resolution Linkages.Journal of computational biology : a journal of computational molecular cell biology · 2023
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39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 10 institutions in 4 countries.

Cara C BurnsDivision of Viral Diseases, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA. CBurns@cdc.gov
Jing Shaw
Jaume Jorba
David Bukbuk
Festus Adu
Nicksy Gumede
Muhammed Ali Pate
Emmanuel Ade Abanida
Alex Gasasira
Jane Iber
Qi Chen
Annelet Vincent
Paul Chenoweth
Elizabeth Henderson
Kathleen Wannemuehler
Asif Naeem
Rifqiyah Nur Umami
Yorihiro Nishimura
Hiroyuki Shimizu
Marycelin Baba
Adekunle Adeniji
A J Williams
David R Kilpatrick
M Steven Oberste
Steven G Wassilak
Oyewale Tomori
Mark A Pallansch
Olen Kew
Centers for Disease Control and Prevention · USNational Center for Immunization and Respiratory Diseases · USNational Institute of Infectious Diseases · JPCenter for Global Health · USNational Primary Health Care Development Agency · NGUniversity of Ibadan · NGUniversity of Maiduguri · NGRedeemer's University · NGRespiratory and Meningeal Pathogens Research Unit · ZAWorld Health Organization - Nigeria · NG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Since 2005, a large poliomyelitis outbreak associated with type 2 circulating vaccine-derived poliovirus (cVDPV2) has occurred in northern Nigeria, where immunization coverage with trivalent oral poliovirus vaccine (tOPV) has been low. Phylogenetic analysis of P1/capsid region sequences of isolates from each of the 403 cases reported in 2005 to 2011 resolved the outbreak into 23 independent type 2 vaccine-derived poliovirus (VDPV2) emergences, at least 7 of which established circulating lineage groups. Virus from one emergence (lineage group 2005-8; 361 isolates) was estimated to have circulated for over 6 years. The population of the major cVDPV2 lineage group expanded rapidly in early 2009, fell sharply after two tOPV rounds in mid-2009, and gradually expanded again through 2011. The two major determinants of attenuation of the Sabin 2 oral poliovirus vaccine strain (A481 in the 5'-untranslated region [5'-UTR] and VP1-Ile143) had been replaced in all VDPV2 isolates; most A481 5'-UTR replacements occurred by recombination with other enteroviruses. cVDPV2 isolates representing different lineage groups had biological properties indistinguishable from those of wild polioviruses, including efficient growth in neuron-derived HEK293 cells, the capacity to cause paralytic disease in both humans and PVR-Tg21 transgenic mice, loss of the temperature-sensitive phenotype, and the capacity for sustained person-to-person transmission. We estimate from the poliomyelitis case count and the paralytic case-to-infection ratio for type 2 wild poliovirus infections that ∼700,000 cVDPV2 infections have occurred during the outbreak. The detection of multiple concurrent cVDPV2 outbreaks in northern Nigeria highlights the risks of cVDPV emergence accompanying tOPV use at low rates of coverage in developing countries.

Indexed as

AnimalsCapsid ProteinsDisease OutbreaksFemaleHumansMaleMiceMolecular Sequence DataNigeriaPhylogenyPoliomyelitisPoliovirusPoliovirus Vaccine, OralPoliovirus VaccinesCapsid ProteinsPoliovirus Vaccine, OralPoliovirus VaccinesVP1 protein, PoliovirusVP2 protein, Poliovirus

Identifiers

PMID23408630
PMCPMC3624331
OpenAlexW2031551277

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.