Evidence map›Paper›PMID 23408158›Full record

ArticleBiology open2012

Highly efficient bi-allelic mutation rates using TALENs in Xenopus tropicalis.

Shoko Ishibashi, Rebecca Cliffe, Enrique Amaya

Open access · goldAbstract read
In one paragraph

Article in Biology open, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 70 citations in OpenAlex.

  1. CRISPR/Cas9 Gene Disruption Studies in FMethods in molecular biology (Clifton, N.J.) · 2023
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  9. Functional Cloning Using a Xenopus Oocyte Expression System.Journal of visualized experiments : JoVE · 2016
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  18. TAL effectors: tools for DNA targeting.Briefings in functional genomics · 2014
    Article
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Shoko IshibashiThe Healing Foundation Centre, Faculty of Life Sciences, University of Manchester , Oxford Road, Manchester M13 9PT , UK.
Rebecca Cliffe
Enrique Amaya
LGBT Foundation · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the past decade, Xenopus tropicalis has emerged as a powerful new amphibian genetic model system, which offers all of the experimental advantages of its larger cousin, Xenopus laevis. Here we investigated the efficiency of transcription activator-like effector nucleases (TALENs) for generating targeted mutations in endogenous genes in X. tropicalis. For our analysis we targeted the tyrosinase (oculocutaneous albinism IA) (tyr) gene, which is required for the production of skin pigments, such as melanin. We injected mRNA encoding TALENs targeting the first exon of the tyr gene into two-cell-stage embryos. Surprisingly, we found that over 90% of the founder animals developed either partial or full albinism, suggesting that the TALENs induced bi-allelic mutations in the tyr gene at very high frequency in the F0 animals. Furthermore, mutations tyr gene were efficiently transmitted into the F1 progeny, as evidenced by the generation of albino offspring. These findings have far reaching implications in our quest to develop efficient reverse genetic approaches in this emerging amphibian model.

Indexed as

NucleaseReverse geneticsTAL effectorTargeted mutagenesis

Identifiers

PMID23408158
PMCPMC3558749
OpenAlexW2119225853

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.