Evidence map›Paper›PMID 23407828›Full record

ArticleProceedings. Biological sciences2013

A family of diatom-like silicon transporters in the siliceous loricate choanoflagellates.

Alan O Marron, Mark J Alston, Darren Heavens, Michael Akam, Mario Caccamo, Peter W H Holland, Giselle Walker

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings. Biological sciences, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Phytolith Formation in Plants: From Soil to Cell.Plants (Basel, Switzerland) · 2019
    Review
  9. Article
  10. Article
  11. Identification of a mammalian silicon transporter.American journal of physiology. Cell physiology · 2017
    Article
  12. The Evolution of Silicon Transport in Eukaryotes.Molecular biology and evolution · 2016
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Bacterial influences on animal origins.Cold Spring Harbor perspectives in biology · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

Alan O MarronDepartment of Zoology, University of Cambridge, Cambridge CB2 3EJ, UK. am543@cam.ac.uk
Mark J Alston
Darren Heavens
Michael Akam
Mario Caccamo
Peter W H Holland
Giselle Walker
Earlham Institute · GBUniversity of Cambridge · GBNorwich Research Park · GBUniversity of Otago · NZUniversity of Oxford · GB

Funding

Biotechnology and Biological Sciences Research Council BB/E527604/1Biotechnology and Biological Sciences Research Council CCC-1-10
6 · The paper itself

Abstract

Biosilicification is widespread across the eukaryotes and requires concentration of silicon in intracellular vesicles. Knowledge of the molecular mechanisms underlying this process remains limited, with unrelated silicon-transporting proteins found in the eukaryotic clades previously studied. Here, we report the identification of silicon transporter (SIT)-type genes from the siliceous loricate choanoflagellates Stephanoeca diplocostata and Diaphanoeca grandis. Until now, the SIT gene family has been identified only in diatoms and other siliceous stramenopiles, which are distantly related to choanoflagellates among the eukaryotes. This is the first evidence of similarity between SITs from different eukaryotic supergroups. Phylogenetic analysis indicates that choanoflagellate and stramenopile SITs form distinct monophyletic groups. The absence of putative SIT genes in any other eukaryotic groups, including non-siliceous choanoflagellates, leads us to propose that SIT genes underwent a lateral gene transfer event between stramenopiles and loricate choanoflagellates. We suggest that the incorporation of a foreign SIT gene into the stramenopile or choanoflagellate genome resulted in a major metabolic change: the acquisition of biomineralized silica structures. This hypothesis implies that biosilicification has evolved multiple times independently in the eukaryotes, and paves the way for a better understanding of the biochemical basis of silicon transport through identification of conserved sequence motifs.

Indexed as

Amino Acid SequenceBiological TransportCarrier ProteinsChoanoflagellataConserved SequenceDiatomsEvolution, MolecularGene Transfer, HorizontalMolecular Sequence DataPhylogenySequence Homology, Amino AcidSiliconCarrier ProteinsSilicon

Identifiers

PMID23407828
PMCPMC3574361
OpenAlexW2060805239

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.