Evidence map›Paper›PMID 23405259›Full record

ArticlePloS one2013

A multi-omic systems-based approach reveals metabolic markers of bacterial vaginosis and insight into the disease.

Carl J Yeoman, Susan M Thomas, Margret E Berg Miller, Alexander V Ulanov, Manolito Torralba, Sarah Lucas, Marcus Gillis, Melissa Cregger, Andres Gomez, Mengfei Ho and 8 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed, 1 pooled it
8.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed, 1 synthesis or guideline pooled it, 148 citations in OpenAlex.

  1. Pooled it
  2. Trial
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  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
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  11. Article
  12. Cervicovaginal microbial features predictInfection and immunity · 2025
    Article
  13. Bacterial vaginosis.Nature reviews. Disease primers · 2025
    Review
  14. Influence of cervicovaginal microbiota onMicrobial cell (Graz, Austria) · 2025
    Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 6 institutions in 1 country.

Carl J YeomanDepartment of Animal and Range Sciences, Montana State University, Bozeman, Montana, United States of America.
Susan M Thomas
Margret E Berg Miller
Alexander V Ulanov
Manolito Torralba
Sarah Lucas
Marcus Gillis
Melissa Cregger
Andres Gomez
Mengfei Ho
Steven R Leigh
Rebecca Stumpf
Douglas J Creedon
Michael A Smith
Jon S Weisbaum
Karen E Nelson
Brenda A Wilson
Bryan A White
University of Illinois Urbana-Champaign · USJ. Craig Venter Institute · USCarle Foundation Hospital · USMayo Clinic · USUniversity of Illinois System · USUrbana University · US

Funding

The Human Vaginal Microbiome and Bacterial VaginosisR56AI085096 · NIAID · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI WHITE, BRYAN · 2010 to 2010
$660k
NIAID NIH HHS R56 AI085096NIAID NIH HHS R56 AI085096-01
6 · The paper itself

Abstract

backgroundBacterial vaginosis (BV) is the most common vaginal disorder of reproductive-age women. Yet the cause of BV has not been established. To uncover key determinants of BV, we employed a multi-omic, systems-biology approach, including both deep 16S rRNA gene-based sequencing and metabolomics of lavage samples from 36 women. These women varied demographically, behaviorally, and in terms of health status and symptoms. PRINCIPAL

findings16S rRNA gene-based community composition profiles reflected Nugent scores, but not Amsel criteria. In contrast, metabolomic profiles were markedly more concordant with Amsel criteria. Metabolomic profiles revealed two distinct symptomatic BV types (SBVI and SBVII) with similar characteristics that indicated disruption of epithelial integrity, but each type was correlated to the presence of different microbial taxa and metabolites, as well as to different host behaviors. The characteristic odor associated with BV was linked to increases in putrescine and cadaverine, which were both linked to Dialister spp. Additional correlations were seen with the presence of discharge, 2-methyl-2-hydroxybutanoic acid, and Mobiluncus spp., and with pain, diethylene glycol and Gardnerella spp.

conclusionsThe results not only provide useful diagnostic biomarkers, but also may ultimately provide much needed insight into the determinants of BV.

Indexed as

MetabolomicsActinomycetales InfectionsAdultDNA, BacterialFemaleGene Regulatory NetworksGram-Positive Bacterial InfectionsHumansHydroxybutyratesLactobacillusMiddle AgedMobiluncusPolymerase Chain ReactionRNA, Ribosomal, 16SVaginaVaginal Diseases2-hydroxybutyric acidDNA, BacterialHydroxybutyratesRNA, Ribosomal, 16S

Identifiers

PMID23405259
PMCPMC3566083
OpenAlexW2083618864

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.