Evidence map›Paper›PMID 23405203›Full record

ArticlePloS one2013

N-glycoproteome of E14.Tg2a mouse embryonic stem cells.

Bingyun Sun, Li Ma, Xiaowei Yan, Denis Lee, Vinita Alexander, Laura J Hohmann, Cynthia Lorang, Lalangi Chandrasena, Qiang Tian, Leroy Hood

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 24 citations in OpenAlex.

  1. Pepsin Digestion for Proteomic Studies of the Human Hair Shaft.Rapid communications in mass spectrometry : RCM · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Absolute Quantification of Nav1.5 Expression by Targeted Mass Spectrometry.International journal of molecular sciences · 2022
    Article
  6. Article
  7. The quest of cell surface markers for stem cell therapy.Cellular and molecular life sciences : CMLS · 2021
    Review
  8. Article
  9. Chemical Glycoproteomics.Chemical reviews · 2016
    Review
  10. Review
  11. Glycopeptide capture for cell surface proteomics.Journal of visualized experiments : JoVE · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Bingyun SunInstitute for Systems Biology, Seattle, Washington, United States of America. bingyun_sun@sfu.ca
Li Ma
Xiaowei Yan
Denis Lee
Vinita Alexander
Laura J Hohmann
Cynthia Lorang
Lalangi Chandrasena
Qiang Tian
Leroy Hood
Institute for Systems Biology · USSimon Fraser University · CA

Funding

Quantitative Systems BiologyP50GM076547 · NIGMS · INSTITUTE FOR SYSTEMS BIOLOGY · PI BALIGA, NITIN S · 2006 to 2016
$30.6M
Nation Center- Integrative Biomedical Informatics(RMI)U54DA021519 · NIDA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ATHEY, BRIAN DAVID · 2005 to 2010
$21.3M
QUANTITATIVE IMAGE ANALYSIS SPECIALIZED RESOURCE COREU54CA119347 · NCI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI HEATH, JAMES R. · 2005 to 2009
$17.8M
STEM CELL DETRMINATION GENES IN HSC AND HEMATOLYMPHOID CELLS IN MICEP01DK053074 · NIDDK · STANFORD UNIVERSITY · PI CLARKE, MICHAEL F · 1997 to 2007
$8.3M
NCI NIH HHS 1U54CA119347NCI NIH HHS U54 CA119347NIDA NIH HHS 1U54DA021519NIDA NIH HHS U54 DA021519NIDDK NIH HHS P01 DK053074NIDDK NIH HHS P01 DK53074NIGMS NIH HHS 1P50GM076547NIGMS NIH HHS P50 GM076547
6 · The paper itself

Abstract

E14.Tg2a mouse embryonic stem (mES) cells are a widely used host in gene trap and gene targeting techniques. Molecular characterization of host cells will provide background information for a better understanding of functions of the knockout genes. Using a highly selective glycopeptide-capture approach but ordinary liquid chromatography coupled mass spectrometry (LC-MS), we characterized the N-glycoproteins of E14.Tg2a cells and analyzed the close relationship between the obtained N-glycoproteome and cell-surface proteomes. Our results provide a global view of cell surface protein molecular properties, in which receptors seem to be much more diverse but lower in abundance than transporters on average. In addition, our results provide a systematic view of the E14.Tg2a N-glycosylation, from which we discovered some striking patterns, including an evolutionarily preserved and maybe functionally selected complementarity between N-glycosylation and the transmembrane structure in protein sequences. We also observed an environmentally influenced N-glycosylation pattern among glycoenzymes and extracellular matrix proteins. We hope that the acquired information enhances our molecular understanding of mES E14.Tg2a as well as the biological roles played by N-glycosylation in cell biology in general.

Indexed as

AnimalsCell MembraneCells, CulturedChromatography, LiquidEmbryonic Stem CellsGlycopeptidesGlycoproteinsGlycosylationMembrane ProteinsMiceProteomeProteomicsSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationGlycopeptidesGlycoproteinsMembrane ProteinsProteome

Identifiers

PMID23405203
PMCPMC3565968
OpenAlexW2008872906

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.