Evidence map›Paper›PMID 23405136›Full record

ArticlePloS one2013

Turnip mosaic potyvirus probably first spread to Eurasian brassica crops from wild orchids about 1000 years ago.

Huy D Nguyen, Yasuhiro Tomitaka, Simon Y W Ho, Sebastián Duchêne, Heinrich-Josef Vetten, Dietrich Lesemann, John A Walsh, Adrian J Gibbs, Kazusato Ohshima

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
15.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 100 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Viruses · 2022
    Article
  7. Genetic diversity and evolutionary analyses of potyviruses infecting narcissus in Iran.Journal of plant pathology : an international journal of the Italian Phytopathological Society · 2022
    Article
  8. Article
  9. Article
  10. Article
  11. Resistance to Turnip Mosaic Virus in the FamilyThe plant pathology journal · 2021
    Review
  12. Article
  13. Microarray analysis ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2021
    Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 4 countries.

Huy D NguyenLaboratory of Plant Virology, Faculty of Agriculture, Saga University, Saga, Japan.
Yasuhiro Tomitaka
Simon Y W Ho
Sebastián Duchêne
Heinrich-Josef Vetten
Dietrich Lesemann
John A Walsh
Adrian J Gibbs
Kazusato Ohshima
Julius Kühn-Institut · DESaga University · JPUniversity of Sydney · AUAustralian National University · AUKagoshima University · JPUniversity of Warwick · GB

Funding

Biotechnology and Biological Sciences Research Council BB/E00668X/1
6 · The paper itself

Abstract

Turnip mosaic potyvirus (TuMV) is probably the most widespread and damaging virus that infects cultivated brassicas worldwide. Previous work has indicated that the virus originated in western Eurasia, with all of its closest relatives being viruses of monocotyledonous plants. Here we report that we have identified a sister lineage of TuMV-like potyviruses (TuMV-OM) from European orchids. The isolates of TuMV-OM form a monophyletic sister lineage to the brassica-infecting TuMVs (TuMV-BIs), and are nested within a clade of monocotyledon-infecting viruses. Extensive host-range tests showed that all of the TuMV-OMs are biologically similar to, but distinct from, TuMV-BIs and do not readily infect brassicas. We conclude that it is more likely that TuMV evolved from a TuMV-OM-like ancestor than the reverse. We did Bayesian coalescent analyses using a combination of novel and published sequence data from four TuMV genes [helper component-proteinase protein (HC-Pro), protein 3(P3), nuclear inclusion b protein (NIb), and coat protein (CP)]. Three genes (HC-Pro, P3, and NIb), but not the CP gene, gave results indicating that the TuMV-BI viruses diverged from TuMV-OMs around 1000 years ago. Only 150 years later, the four lineages of the present global population of TuMV-BIs diverged from one another. These dates are congruent with historical records of the spread of agriculture in Western Europe. From about 1200 years ago, there was a warming of the climate, and agriculture and the human population of the region greatly increased. Farming replaced woodlands, fostering viruses and aphid vectors that could invade the crops, which included several brassica cultivars and weeds. Later, starting 500 years ago, inter-continental maritime trade probably spread the TuMV-BIs to the remainder of the world.

Indexed as

Bayes TheoremBrassicaBrassica napusCapsid ProteinsCaulimovirusCell LineageCrops, AgriculturalCysteine EndopeptidasesDNA-Directed RNA PolymerasesEuropePhylogenyPlant DiseasesPotyvirusViral ProteinsCapsid ProteinsCysteine EndopeptidasesDNA-Directed RNA PolymerasesHC-Pro protein, potyvirusnuclear inclusion protein b, mosaic virusesViral Proteins

Identifiers

PMID23405136
PMCPMC3566190
OpenAlexW2099114486

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.