Evidence map›Paper›PMID 23403034›Full record

ArticleGenome research2013

Genome-wide bimolecular fluorescence complementation analysis of SUMO interactome in yeast.

Min-Kyung Sung, Gyubum Lim, Dae-Gwan Yi, Yeon Ji Chang, Eun Bin Yang, Kiyoung Lee, Won-Ki Huh

Abstract read
In one paragraph

Article in Genome research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. A Yeast BiFC-seq Method for Genome-wide Interactome Mapping.Genomics, proteomics & bioinformatics · 2022
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Protein Topology Prediction Algorithms Systematically Investigated in the Yeast Saccharomyces cerevisiae.BioEssays : news and reviews in molecular, cellular and developmental biology · 2019
    Article
  15. Article
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Min-Kyung SungDepartment of Biological Sciences, Seoul National University, Seoul 151-747, Republic of Korea.
Gyubum Lim
Dae-Gwan Yi
Yeon Ji Chang
Eun Bin Yang
Kiyoung Lee
Won-Ki Huh

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The definition of protein-protein interactions (PPIs) in the natural cellular context is essential for properly understanding various biological processes. So far, however, most large-scale PPI analyses have not been performed in the natural cellular context. Here, we describe the construction of a Saccharomyces cerevisiae fusion library in which each endogenous gene is C-terminally tagged with the N-terminal fragment of Venus (VN) for a genome-wide bimolecular fluorescence complementation assay, a powerful technique for identifying PPIs in living cells. We illustrate the utility of the VN fusion library by systematically analyzing the interactome of the small ubiquitin-related modifier (SUMO) and provide previously unavailable information on the subcellular localization, types, and protease dependence of SUMO interactions. Our data set is highly complementary to the existing data sets and represents a useful resource for expanding the understanding of the physiological roles of SUMO. In addition, the VN fusion library provides a useful research tool that makes it feasible to systematically analyze PPIs in the natural cellular context.

Indexed as

Genome-Wide Association StudyProtein Interaction MappingCell CycleComputational BiologyGene LibraryGene OrderGenetic Complementation TestProtein BindingReproducibility of ResultsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSubstrate SpecificitySUMO-1 ProteinYeastsSaccharomyces cerevisiae ProteinsSUMO-1 Protein

Identifiers

PMID23403034
PMCPMC3613590

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.