Evidence map›Paper›PMID 23402562›Full record

ArticleEnvironmental science & technology2013

Ligand-enhanced abiotic iron oxidation and the effects of chemical versus biological iron cycling in anoxic environments.

Sebastian H Kopf, Cynthia Henny, Dianne K Newman

Abstract read
In one paragraph

Article in Environmental science & technology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
9.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 92 citations in OpenAlex.

  1. Article
  2. Article
  3. Electron Transfer Mechanism at the Interface of Multi-Heme Cytochromes and Metal Oxide.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2023
    Article
  4. Tris-Co(II)-HACS omega · 2019
    Article
  5. Article
  6. Abiotic nitrate loss and nitrogenous trace gas emission from Chinese acidic forest soils.Environmental science and pollution research international · 2017
    Article
  7. Article
  8. Article
  9. Article
  10. Using non-enzymatic chemistry to influence microbial metabolism.Current opinion in chemical biology · 2015
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Sebastian H KopfDivision of Geologial and Planetary Sciences, California Institute of Technology, Pasadena, California, USA.
Cynthia Henny
Dianne K Newman
Howard Hughes Medical Institute · USIndonesian Institute of Sciences · ID

Funding

Howard Hughes Medical Institute
6 · The paper itself

Abstract

This study introduces a newly isolated, genetically tractable bacterium ( Pseudogulbenkiania sp. strain MAI-1) and explores the extent to which its nitrate-dependent iron-oxidation activity is directly biologically catalyzed. Specifically, we focused on the role of iron chelating ligands in promoting chemical oxidation of Fe(II) by nitrite under anoxic conditions. Strong organic ligands such as nitrilotriacetate and citrate can substantially enhance chemical oxidation of Fe(II) by nitrite at circumneutral pH. We show that strain MAI-1 exhibits unambiguous biological Fe(II) oxidation despite a significant contribution (∼30-35%) from ligand-enhanced chemical oxidation. Our work with the model denitrifying strain Paracoccus denitrificans further shows that ligand-enhanced chemical oxidation of Fe(II) by microbially produced nitrite can be an important general side effect of biological denitrification. Our assessment of reaction rates derived from literature reports of anaerobic Fe(II) oxidation, both chemical and biological, highlights the potential competition and likely co-occurrence of chemical Fe(II) oxidation (mediated by microbial production of nitrite) and truly biological Fe(II) oxidation.

Indexed as

Chelating AgentsDenitrificationFerrous CompoundsIronLigandsNeisseriaceaeNitratesOxidation-ReductionParacoccus denitrificansChelating AgentsFerrous CompoundsIronLigandsNitrates

Identifiers

PMID23402562
PMCPMC3604861
OpenAlexW2122202426

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.